Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 AC055876.2-201ENST00000531834 546 ntBASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 AJ011932.1-201ENST00000621707 465 ntBASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
CCDC39Q9UFE4 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 CR383656.2-201ENST00000548656 2254 ntBASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
CCDC39Q9UFE4 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 CLASRP-204ENST00000544944 2769 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 HADH-202ENST00000403312 1752 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 AC026410.3-201ENST00000514280 936 ntBASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CCDC39Q9UFE4 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 GOLGA8VP-201ENST00000559009 1798 ntBASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 AC055811.4-201ENST00000624039 1754 ntBASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 E2F7-202ENST00000416496 5297 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 MOCS3-201ENST00000244051 5106 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 CNTN1-203ENST00000547702 3033 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 AC007787.1-201ENST00000588095 1583 ntBASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 RAC2-204ENST00000406508 893 ntTSL 5 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 UGT1A2P-201ENST00000454886 866 ntBASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.25■□□□□ 0.35
CCDC39Q9UFE4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms