Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 SNX21-203ENST00000372541 771 ntTSL 2 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.84■□□□□ 0.13
SIX2Q9NPC8 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 RGS5-214ENST00000429865 754 ntTSL 3 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 CICP12-201ENST00000455801 843 ntBASIC15.84■□□□□ 0.13
SIX2Q9NPC8 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 COX5BP1-201ENST00000507622 393 ntBASIC15.84■□□□□ 0.13
SIX2Q9NPC8 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 LARP4-220ENST00000615080 856 ntTSL 5 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 EXO5-201ENST00000296380 2217 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
SIX2Q9NPC8 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
SIX2Q9NPC8 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
SIX2Q9NPC8 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.83■□□□□ 0.13
SIX2Q9NPC8 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SIX2Q9NPC8 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.13
SIX2Q9NPC8 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.83■□□□□ 0.13
SIX2Q9NPC8 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.13
SIX2Q9NPC8 CHIT1-202ENST00000367229 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SIX2Q9NPC8 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
SIX2Q9NPC8 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 FBXL7-203ENST00000510662 1758 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 AC067930.6-201ENST00000623257 4947 ntBASIC15.83■□□□□ 0.12
SIX2Q9NPC8 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
SIX2Q9NPC8 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 FAM219A-209ENST00000445726 3644 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
SIX2Q9NPC8 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms