Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP28Q96RU2 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP28Q96RU2 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP28Q96RU2 PIN1P1-201ENST00000412108 996 ntBASIC16.96■□□□□ 0.31
USP28Q96RU2 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.96■□□□□ 0.31
USP28Q96RU2 AL391280.1-201ENST00000506969 1062 ntBASIC16.96■□□□□ 0.31
USP28Q96RU2 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC16.96■□□□□ 0.31
USP28Q96RU2 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP28Q96RU2 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.96■□□□□ 0.31
USP28Q96RU2 TP53TG3HP-202ENST00000569755 579 ntBASIC16.96■□□□□ 0.31
USP28Q96RU2 AC138466.3-201ENST00000619983 221 ntBASIC16.96■□□□□ 0.31
USP28Q96RU2 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.96■□□□□ 0.31
USP28Q96RU2 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
USP28Q96RU2 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC16.96■□□□□ 0.31
USP28Q96RU2 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
USP28Q96RU2 AC009093.2-202ENST00000620513 2079 ntBASIC16.96■□□□□ 0.31
USP28Q96RU2 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
USP28Q96RU2 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
USP28Q96RU2 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
USP28Q96RU2 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
USP28Q96RU2 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC16.95■□□□□ 0.3
USP28Q96RU2 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.95■□□□□ 0.3
USP28Q96RU2 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 PAX3-203ENST00000344493 3109 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 AC139712.1-201ENST00000378256 1875 ntBASIC16.95■□□□□ 0.3
USP28Q96RU2 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
USP28Q96RU2 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
USP28Q96RU2 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.95■□□□□ 0.3
USP28Q96RU2 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 AC012441.1-201ENST00000446669 685 ntBASIC16.95■□□□□ 0.3
USP28Q96RU2 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.95■□□□□ 0.3
USP28Q96RU2 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.95■□□□□ 0.3
USP28Q96RU2 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.95■□□□□ 0.3
USP28Q96RU2 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.95■□□□□ 0.3
USP28Q96RU2 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.95■□□□□ 0.3
USP28Q96RU2 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC16.95■□□□□ 0.3
USP28Q96RU2 MBLAC2-202ENST00000514906 1936 ntBASIC16.95■□□□□ 0.3
USP28Q96RU2 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
USP28Q96RU2 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC16.95■□□□□ 0.3
USP28Q96RU2 AL359881.3-201ENST00000602640 1721 ntBASIC16.95■□□□□ 0.3
USP28Q96RU2 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC16.95■□□□□ 0.3
USP28Q96RU2 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.95■□□□□ 0.3
USP28Q96RU2 AL589669.1-201ENST00000639829 1506 ntTSL 5 BASIC16.95■□□□□ 0.3
USP28Q96RU2 HSPA8P5-201ENST00000456928 2069 ntBASIC16.95■□□□□ 0.3
USP28Q96RU2 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
USP28Q96RU2 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.95■□□□□ 0.3
USP28Q96RU2 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.95■□□□□ 0.3
USP28Q96RU2 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
USP28Q96RU2 APAF1-201ENST00000333991 4539 ntTSL 5 BASIC16.95■□□□□ 0.3
USP28Q96RU2 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC16.95■□□□□ 0.3
USP28Q96RU2 AC134312.5-201ENST00000568031 1313 ntBASIC16.95■□□□□ 0.3
USP28Q96RU2 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
USP28Q96RU2 KHSRPP1-201ENST00000427983 1768 ntBASIC16.94■□□□□ 0.3
USP28Q96RU2 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC16.94■□□□□ 0.3
USP28Q96RU2 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC16.94■□□□□ 0.3
USP28Q96RU2 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
USP28Q96RU2 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
USP28Q96RU2 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
USP28Q96RU2 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
USP28Q96RU2 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
USP28Q96RU2 BAATP1-201ENST00000412284 1225 ntBASIC16.94■□□□□ 0.3
USP28Q96RU2 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC16.94■□□□□ 0.3
USP28Q96RU2 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC16.94■□□□□ 0.3
USP28Q96RU2 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC16.94■□□□□ 0.3
USP28Q96RU2 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
USP28Q96RU2 Z82198.1-201ENST00000447396 437 ntTSL 3 BASIC16.94■□□□□ 0.3
USP28Q96RU2 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC16.94■□□□□ 0.3
USP28Q96RU2 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.94■□□□□ 0.3
USP28Q96RU2 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.94■□□□□ 0.3
USP28Q96RU2 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.94■□□□□ 0.3
USP28Q96RU2 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.94■□□□□ 0.3
USP28Q96RU2 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
USP28Q96RU2 MIR6074-201ENST00000612054 107 ntBASIC16.94■□□□□ 0.3
USP28Q96RU2 ENPP7P14-201ENST00000621765 1040 ntBASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms