Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 HNRNPA1P48-202ENST00000565308 961 ntBASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 AC091271.1-201ENST00000611877 1162 ntBASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
CLIP3Q96DZ5 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 CD8B2-202ENST00000417670 633 ntBASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 MIR4741-201ENST00000579822 90 ntBASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 MIR6869-201ENST00000619434 62 ntBASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 ENPP7P14-201ENST00000621765 1040 ntBASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CLIP3Q96DZ5 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 DGCR9-201ENST00000609630 2415 ntBASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 Z93015.1-201ENST00000451718 390 ntBASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CLIP3Q96DZ5 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.44□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 350.3 ms