Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
CHMP4CQ96CF2 DSEL-201ENST00000310045 9531 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
CHMP4CQ96CF2 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.77■□□□□ 0.43
CHMP4CQ96CF2 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHMP4CQ96CF2 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CHMP4CQ96CF2 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CHMP4CQ96CF2 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CHMP4CQ96CF2 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHMP4CQ96CF2 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 PRDM16-203ENST00000378391 5447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 TPM3P8-201ENST00000330554 643 ntBASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 AL354989.2-201ENST00000435838 1540 ntBASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
CHMP4CQ96CF2 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 FO681548.1-201ENST00000455617 1132 ntBASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 AC022616.1-201ENST00000518688 554 ntBASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CHMP4CQ96CF2 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 AC007686.3-201ENST00000619017 3487 ntBASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 KRT8P14-201ENST00000414254 1442 ntBASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 PPP1R26P4-201ENST00000619065 3527 ntBASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CHMP4CQ96CF2 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms