Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC15.43■□□□□ 0.06
ATG4AQ8WYN0 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 GAK-201ENST00000314167 4442 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 GIMAP3P-201ENST00000495150 836 ntBASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 SERBP1P5-201ENST00000510079 1181 ntBASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 CHCHD2P3-201ENST00000603038 451 ntBASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 AC011498.7-201ENST00000624986 2027 ntBASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 PTENP1-202ENST00000532280 3996 ntBASIC15.42■□□□□ 0.06
ATG4AQ8WYN0 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 PGLYRP4-202ENST00000368739 2116 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 FUK-202ENST00000378912 3925 ntTSL 2 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 AC092364.2-202ENST00000597012 1073 ntBASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 GOLGA8VP-201ENST00000559009 1798 ntBASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
ATG4AQ8WYN0 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms