Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC13.14□□□□□ -0.31
SOX2P48431 AC016397.2-201ENST00000624848 1985 ntBASIC13.14□□□□□ -0.31
SOX2P48431 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 CHRFAM7A-201ENST00000299847 6220 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
SOX2P48431 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 CCSER2-203ENST00000372088 7657 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 RPSAP43-201ENST00000402237 625 ntBASIC13.14□□□□□ -0.31
SOX2P48431 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
SOX2P48431 CNN2P11-201ENST00000429351 262 ntBASIC13.14□□□□□ -0.31
SOX2P48431 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC13.14□□□□□ -0.31
SOX2P48431 AC027369.6-201ENST00000525520 931 ntBASIC13.14□□□□□ -0.31
SOX2P48431 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
SOX2P48431 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC13.14□□□□□ -0.31
SOX2P48431 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC13.14□□□□□ -0.31
SOX2P48431 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.14□□□□□ -0.31
SOX2P48431 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC13.14□□□□□ -0.31
SOX2P48431 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC13.14□□□□□ -0.31
SOX2P48431 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC13.14□□□□□ -0.31
SOX2P48431 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC13.14□□□□□ -0.31
SOX2P48431 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC13.14□□□□□ -0.31
SOX2P48431 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
SOX2P48431 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC13.14□□□□□ -0.31
SOX2P48431 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
SOX2P48431 AL158212.4-201ENST00000624062 1286 ntBASIC13.14□□□□□ -0.31
SOX2P48431 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 ADK-205ENST00000539909 1866 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC13.14□□□□□ -0.31
SOX2P48431 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 TRAPPC10-201ENST00000291574 6976 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
SOX2P48431 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.13□□□□□ -0.31
SOX2P48431 CDCA3-207ENST00000538862 1943 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC13.13□□□□□ -0.31
SOX2P48431 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 THBS2-201ENST00000366787 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
SOX2P48431 SPAST-201ENST00000315285 5117 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
SOX2P48431 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
SOX2P48431 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 UPF3AP3-201ENST00000420996 769 ntBASIC13.13□□□□□ -0.31
SOX2P48431 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.13□□□□□ -0.31
SOX2P48431 AC125807.1-201ENST00000483097 614 ntBASIC13.13□□□□□ -0.31
SOX2P48431 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC13.13□□□□□ -0.31
SOX2P48431 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.13□□□□□ -0.31
SOX2P48431 DHDH-204ENST00000523250 634 ntTSL 5 BASIC13.13□□□□□ -0.31
SOX2P48431 AC109322.1-201ENST00000524499 1264 ntBASIC13.13□□□□□ -0.31
SOX2P48431 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC13.13□□□□□ -0.31
SOX2P48431 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC13.13□□□□□ -0.31
SOX2P48431 RGS22-201ENST00000360863 4296 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
SOX2P48431 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC13.13□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 98.6 ms