Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC12.25□□□□□ -0.45
CDX1P47902 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
CDX1P47902 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 FZD6-206ENST00000523739 2774 ntTSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
CDX1P47902 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC12.24□□□□□ -0.45
CDX1P47902 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC12.24□□□□□ -0.45
CDX1P47902 DLX1-203ENST00000361725 2640 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 NSL1-201ENST00000366976 722 ntTSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 TXNDC12-201ENST00000371626 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC12.24□□□□□ -0.45
CDX1P47902 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
CDX1P47902 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 HADH-202ENST00000403312 1752 ntTSL 5 BASIC12.24□□□□□ -0.45
CDX1P47902 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 AP006294.1-201ENST00000415407 339 ntBASIC12.24□□□□□ -0.45
CDX1P47902 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
CDX1P47902 NME2P1-201ENST00000426182 414 ntBASIC12.24□□□□□ -0.45
CDX1P47902 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC12.24□□□□□ -0.45
CDX1P47902 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC12.24□□□□□ -0.45
CDX1P47902 MYCLP2-201ENST00000449268 967 ntBASIC12.24□□□□□ -0.45
CDX1P47902 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 AC011495.1-201ENST00000498085 584 ntBASIC12.24□□□□□ -0.45
CDX1P47902 SLED1-202ENST00000512051 380 ntBASIC12.24□□□□□ -0.45
CDX1P47902 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 SLC5A9-210ENST00000533824 2219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC12.24□□□□□ -0.45
CDX1P47902 USH1G-202ENST00000614341 3558 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC12.24□□□□□ -0.45
CDX1P47902 AL035252.4-201ENST00000624174 288 ntBASIC12.24□□□□□ -0.45
CDX1P47902 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 CILP2-201ENST00000291495 4199 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 GIPR-205ENST00000590918 3289 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC12.24□□□□□ -0.45
CDX1P47902 DDX3X-201ENST00000399959 5399 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 YME1L1-202ENST00000375972 2517 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
CDX1P47902 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 RPS6KA2-204ENST00000481261 2297 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
CDX1P47902 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 SLC12A6-206ENST00000558589 3866 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.23□□□□□ -0.45
CDX1P47902 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC12.23□□□□□ -0.45
CDX1P47902 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC12.23□□□□□ -0.45
CDX1P47902 MPI-203ENST00000535694 1523 ntTSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC12.23□□□□□ -0.45
CDX1P47902 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC12.23□□□□□ -0.45
CDX1P47902 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 DGCR5-201ENST00000399539 862 ntBASIC12.23□□□□□ -0.45
CDX1P47902 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC12.23□□□□□ -0.45
CDX1P47902 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
CDX1P47902 AC074338.1-201ENST00000416825 156 ntBASIC12.23□□□□□ -0.45
CDX1P47902 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CDX1P47902 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC12.23□□□□□ -0.45
CDX1P47902 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms