Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGB1P09429 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGB1P09429 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
HMGB1P09429 SNX18-202ENST00000343017 3140 ntBASIC17.49■□□□□ 0.39
HMGB1P09429 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 AL136309.1-201ENST00000403917 691 ntBASIC17.49■□□□□ 0.39
HMGB1P09429 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 COX5BP1-201ENST00000507622 393 ntBASIC17.49■□□□□ 0.39
HMGB1P09429 AHRR-211ENST00000515206 462 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGB1P09429 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGB1P09429 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGB1P09429 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.49■□□□□ 0.39
HMGB1P09429 LINC02084-201ENST00000606069 1096 ntBASIC17.49■□□□□ 0.39
HMGB1P09429 AC012645.4-201ENST00000610691 1061 ntBASIC17.49■□□□□ 0.39
HMGB1P09429 AC002472.3-201ENST00000640124 621 ntBASIC17.49■□□□□ 0.39
HMGB1P09429 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 AC027601.5-201ENST00000624065 2482 ntBASIC17.49■□□□□ 0.39
HMGB1P09429 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGB1P09429 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 AC215219.1-201ENST00000400706 1817 ntBASIC17.49■□□□□ 0.39
HMGB1P09429 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
HMGB1P09429 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC17.49■□□□□ 0.39
HMGB1P09429 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGB1P09429 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC17.49■□□□□ 0.39
HMGB1P09429 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 AC022400.6-201ENST00000603027 5818 ntAPPRIS P5 TSL 2 BASIC17.48■□□□□ 0.39
HMGB1P09429 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGB1P09429 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
HMGB1P09429 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGB1P09429 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
HMGB1P09429 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGB1P09429 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGB1P09429 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 GZMB-202ENST00000382540 816 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGB1P09429 BOLA2P3-201ENST00000404566 256 ntBASIC17.48■□□□□ 0.39
HMGB1P09429 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGB1P09429 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGB1P09429 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC17.48■□□□□ 0.39
HMGB1P09429 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
HMGB1P09429 ZACNP1-201ENST00000612259 710 ntBASIC17.48■□□□□ 0.39
HMGB1P09429 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC17.48■□□□□ 0.39
HMGB1P09429 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC17.48■□□□□ 0.39
HMGB1P09429 RHOXF1P1-202ENST00000635473 501 ntBASIC17.48■□□□□ 0.39
HMGB1P09429 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 WARS-203ENST00000358655 2466 ntTSL 2 BASIC17.48■□□□□ 0.39
HMGB1P09429 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
HMGB1P09429 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC17.48■□□□□ 0.39
HMGB1P09429 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
HMGB1P09429 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HMGB1P09429 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGB1P09429 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HMGB1P09429 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGB1P09429 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
HMGB1P09429 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
HMGB1P09429 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGB1P09429 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
HMGB1P09429 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGB1P09429 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
HMGB1P09429 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
HMGB1P09429 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC17.47■□□□□ 0.39
HMGB1P09429 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms