Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SPTA1P02549 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SPTA1P02549 DHCR24-201ENST00000371269 4250 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SPTA1P02549 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SPTA1P02549 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SPTA1P02549 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SPTA1P02549 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC13.4□□□□□ -0.26
SPTA1P02549 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SPTA1P02549 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SPTA1P02549 BANF1P3-201ENST00000412556 261 ntBASIC13.4□□□□□ -0.26
SPTA1P02549 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SPTA1P02549 ATXN8OS-202ENST00000424524 1236 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SPTA1P02549 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC13.4□□□□□ -0.26
SPTA1P02549 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC13.4□□□□□ -0.26
SPTA1P02549 AC004837.1-201ENST00000446267 564 ntBASIC13.4□□□□□ -0.26
SPTA1P02549 AREG-202ENST00000502307 956 ntTSL 5 BASIC13.4□□□□□ -0.26
SPTA1P02549 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC13.4□□□□□ -0.26
SPTA1P02549 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC13.4□□□□□ -0.26
SPTA1P02549 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SPTA1P02549 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
SPTA1P02549 AC009560.1-201ENST00000620208 434 ntBASIC13.4□□□□□ -0.26
SPTA1P02549 AC011471.3-201ENST00000623576 402 ntBASIC13.4□□□□□ -0.26
SPTA1P02549 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC13.4□□□□□ -0.26
SPTA1P02549 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC13.4□□□□□ -0.26
SPTA1P02549 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SPTA1P02549 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC13.4□□□□□ -0.26
SPTA1P02549 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.27
SPTA1P02549 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
SPTA1P02549 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.27
SPTA1P02549 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 KRT8P31-201ENST00000504812 1408 ntBASIC13.39□□□□□ -0.27
SPTA1P02549 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
SPTA1P02549 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC13.39□□□□□ -0.27
SPTA1P02549 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 KRT18P36-201ENST00000411618 1276 ntBASIC13.39□□□□□ -0.27
SPTA1P02549 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC13.39□□□□□ -0.27
SPTA1P02549 AL512306.1-201ENST00000432698 848 ntBASIC13.39□□□□□ -0.27
SPTA1P02549 AL645933.1-201ENST00000440087 609 ntBASIC13.39□□□□□ -0.27
SPTA1P02549 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 RPS23-204ENST00000507980 836 ntTSL 2 BASIC13.39□□□□□ -0.27
SPTA1P02549 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC13.39□□□□□ -0.27
SPTA1P02549 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC13.39□□□□□ -0.27
SPTA1P02549 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC13.39□□□□□ -0.27
SPTA1P02549 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC13.39□□□□□ -0.27
SPTA1P02549 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.39□□□□□ -0.27
SPTA1P02549 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC13.39□□□□□ -0.27
SPTA1P02549 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
SPTA1P02549 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC13.39□□□□□ -0.27
SPTA1P02549 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.39□□□□□ -0.27
SPTA1P02549 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC13.39□□□□□ -0.27
SPTA1P02549 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC13.39□□□□□ -0.27
SPTA1P02549 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC13.39□□□□□ -0.27
SPTA1P02549 MTHFR-217ENST00000641820 1569 ntBASIC13.39□□□□□ -0.27
SPTA1P02549 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC13.39□□□□□ -0.27
SPTA1P02549 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SPTA1P02549 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SPTA1P02549 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SPTA1P02549 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SPTA1P02549 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
SPTA1P02549 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SPTA1P02549 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SPTA1P02549 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
SPTA1P02549 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC13.38□□□□□ -0.27
SPTA1P02549 LINC02447-202ENST00000501888 2146 ntBASIC13.38□□□□□ -0.27
SPTA1P02549 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC13.38□□□□□ -0.27
SPTA1P02549 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SPTA1P02549 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SPTA1P02549 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC13.38□□□□□ -0.27
SPTA1P02549 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC13.38□□□□□ -0.27
SPTA1P02549 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SPTA1P02549 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SPTA1P02549 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.38□□□□□ -0.27
SPTA1P02549 AC018846.1-201ENST00000568231 183 ntBASIC13.38□□□□□ -0.27
SPTA1P02549 SRRM2-205ENST00000570971 1132 ntTSL 2 BASIC13.38□□□□□ -0.27
SPTA1P02549 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SPTA1P02549 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.38□□□□□ -0.27
SPTA1P02549 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC13.38□□□□□ -0.27
SPTA1P02549 HCG18-241ENST00000602290 821 ntTSL 2 BASIC13.38□□□□□ -0.27
SPTA1P02549 AC005041.3-201ENST00000606287 649 ntBASIC13.38□□□□□ -0.27
SPTA1P02549 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC13.38□□□□□ -0.27
SPTA1P02549 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms