Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
LDB3O75112 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC13.99□□□□□ -0.17
LDB3O75112 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
LDB3O75112 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC13.99□□□□□ -0.17
LDB3O75112 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.99□□□□□ -0.17
LDB3O75112 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.99□□□□□ -0.17
LDB3O75112 CNN2P10-201ENST00000443067 918 ntBASIC13.99□□□□□ -0.17
LDB3O75112 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC13.99□□□□□ -0.17
LDB3O75112 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC13.99□□□□□ -0.17
LDB3O75112 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC13.99□□□□□ -0.17
LDB3O75112 AP006547.1-201ENST00000563435 692 ntBASIC13.99□□□□□ -0.17
LDB3O75112 PPY2P-201ENST00000582808 702 ntBASIC13.99□□□□□ -0.17
LDB3O75112 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC13.99□□□□□ -0.17
LDB3O75112 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC13.99□□□□□ -0.17
LDB3O75112 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.99□□□□□ -0.17
LDB3O75112 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 AC113367.3-201ENST00000508316 1912 ntBASIC13.99□□□□□ -0.17
LDB3O75112 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.99□□□□□ -0.17
LDB3O75112 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
LDB3O75112 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC13.99□□□□□ -0.17
LDB3O75112 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC13.99□□□□□ -0.17
LDB3O75112 AC092135.3-201ENST00000624151 1846 ntBASIC13.99□□□□□ -0.17
LDB3O75112 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
LDB3O75112 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
LDB3O75112 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
LDB3O75112 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
LDB3O75112 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.98□□□□□ -0.17
LDB3O75112 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
LDB3O75112 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.98□□□□□ -0.17
LDB3O75112 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
LDB3O75112 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.98□□□□□ -0.17
LDB3O75112 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.98□□□□□ -0.17
LDB3O75112 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC13.98□□□□□ -0.17
LDB3O75112 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
LDB3O75112 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
LDB3O75112 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC13.98□□□□□ -0.17
LDB3O75112 HOMER2P2-201ENST00000451621 847 ntBASIC13.98□□□□□ -0.17
LDB3O75112 BNIP3P42-201ENST00000454982 569 ntBASIC13.98□□□□□ -0.17
LDB3O75112 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC13.98□□□□□ -0.17
LDB3O75112 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC13.98□□□□□ -0.17
LDB3O75112 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC13.98□□□□□ -0.17
LDB3O75112 GCOM2-201ENST00000509133 1104 ntBASIC13.98□□□□□ -0.17
LDB3O75112 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC13.98□□□□□ -0.17
LDB3O75112 MFF-223ENST00000524634 647 ntTSL 2 BASIC13.98□□□□□ -0.17
LDB3O75112 C2orf69P2-201ENST00000562032 1123 ntBASIC13.98□□□□□ -0.17
LDB3O75112 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC13.98□□□□□ -0.17
LDB3O75112 BNIP3P29-201ENST00000598302 571 ntBASIC13.98□□□□□ -0.17
LDB3O75112 AC011447.5-201ENST00000616168 564 ntBASIC13.98□□□□□ -0.17
LDB3O75112 AC002472.3-201ENST00000640124 621 ntBASIC13.98□□□□□ -0.17
LDB3O75112 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC13.98□□□□□ -0.17
LDB3O75112 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.98□□□□□ -0.17
LDB3O75112 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
LDB3O75112 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.98□□□□□ -0.17
LDB3O75112 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 AL354702.1-201ENST00000442006 1960 ntBASIC13.98□□□□□ -0.17
LDB3O75112 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
LDB3O75112 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
LDB3O75112 TNN-203ENST00000622870 3719 ntTSL 5 BASIC13.98□□□□□ -0.17
LDB3O75112 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.97□□□□□ -0.17
LDB3O75112 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
LDB3O75112 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC13.97□□□□□ -0.17
LDB3O75112 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms