Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC244093.1-201ENST00000610837 814 ntBASIC16.57■□□□□ 0.24
MSH4O15457 MIR6787-201ENST00000616675 61 ntBASIC16.57■□□□□ 0.24
MSH4O15457 AC068587.8-201ENST00000641239 219 ntBASIC16.57■□□□□ 0.24
MSH4O15457 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC16.57■□□□□ 0.24
MSH4O15457 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
MSH4O15457 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
MSH4O15457 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.57■□□□□ 0.24
MSH4O15457 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.57■□□□□ 0.24
MSH4O15457 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
MSH4O15457 INTS4P1-203ENST00000641008 3683 ntBASIC16.57■□□□□ 0.24
MSH4O15457 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
MSH4O15457 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC16.56■□□□□ 0.24
MSH4O15457 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC16.56■□□□□ 0.24
MSH4O15457 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC16.56■□□□□ 0.24
MSH4O15457 FAS-202ENST00000352159 1722 ntTSL 5 BASIC16.56■□□□□ 0.24
MSH4O15457 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 PAIP2-202ENST00000394795 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
MSH4O15457 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
MSH4O15457 AC136759.1-202ENST00000530858 2194 ntBASIC16.56■□□□□ 0.24
MSH4O15457 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
MSH4O15457 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC16.56■□□□□ 0.24
MSH4O15457 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC16.56■□□□□ 0.24
MSH4O15457 KRT8P13-201ENST00000463294 1010 ntBASIC16.56■□□□□ 0.24
MSH4O15457 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC16.56■□□□□ 0.24
MSH4O15457 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.56■□□□□ 0.24
MSH4O15457 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.56■□□□□ 0.24
MSH4O15457 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC16.56■□□□□ 0.24
MSH4O15457 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC16.56■□□□□ 0.24
MSH4O15457 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.56■□□□□ 0.24
MSH4O15457 AC009884.2-201ENST00000603110 324 ntBASIC16.56■□□□□ 0.24
MSH4O15457 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.56■□□□□ 0.24
MSH4O15457 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
MSH4O15457 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
MSH4O15457 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
MSH4O15457 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
MSH4O15457 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
MSH4O15457 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
MSH4O15457 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MSH4O15457 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MSH4O15457 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.55■□□□□ 0.24
MSH4O15457 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC16.55■□□□□ 0.24
MSH4O15457 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC16.55■□□□□ 0.24
MSH4O15457 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
MSH4O15457 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC16.55■□□□□ 0.24
MSH4O15457 GDI2-203ENST00000380191 2412 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
MSH4O15457 AC097359.2-201ENST00000604992 2389 ntBASIC16.55■□□□□ 0.24
MSH4O15457 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
MSH4O15457 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.55■□□□□ 0.24
MSH4O15457 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.55■□□□□ 0.24
MSH4O15457 AGER-203ENST00000375065 665 ntTSL 2 BASIC16.55■□□□□ 0.24
MSH4O15457 NPPA-201ENST00000376476 728 ntTSL 3 BASIC16.55■□□□□ 0.24
MSH4O15457 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
MSH4O15457 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.55■□□□□ 0.24
MSH4O15457 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 TPT1P11-201ENST00000458482 498 ntBASIC16.55■□□□□ 0.24
MSH4O15457 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC16.55■□□□□ 0.24
MSH4O15457 AC091804.1-201ENST00000486888 567 ntBASIC16.55■□□□□ 0.24
MSH4O15457 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC16.55■□□□□ 0.24
MSH4O15457 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC16.55■□□□□ 0.24
MSH4O15457 HLA-J-204ENST00000495278 958 ntBASIC16.55■□□□□ 0.24
MSH4O15457 SCARNA21-201ENST00000517026 139 ntBASIC16.55■□□□□ 0.24
MSH4O15457 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC16.55■□□□□ 0.24
MSH4O15457 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
MSH4O15457 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
MSH4O15457 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms