Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPHP1O15259 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.71■□□□□ 0.59
NPHP1O15259 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.71■□□□□ 0.59
NPHP1O15259 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.71■□□□□ 0.59
NPHP1O15259 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
NPHP1O15259 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
NPHP1O15259 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC18.71■□□□□ 0.59
NPHP1O15259 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 NUDT1-201ENST00000339737 698 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 AC098935.1-201ENST00000446057 611 ntBASIC18.71■□□□□ 0.59
NPHP1O15259 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC18.71■□□□□ 0.59
NPHP1O15259 LINC02046-201ENST00000469812 378 ntTSL 3 BASIC18.71■□□□□ 0.59
NPHP1O15259 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
NPHP1O15259 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 AC073352.2-201ENST00000609385 439 ntBASIC18.71■□□□□ 0.59
NPHP1O15259 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC18.71■□□□□ 0.59
NPHP1O15259 RN7SL736P-201ENST00000613111 269 ntBASIC18.71■□□□□ 0.59
NPHP1O15259 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC18.71■□□□□ 0.59
NPHP1O15259 RPL35-206ENST00000629845 340 ntTSL 5 BASIC18.71■□□□□ 0.59
NPHP1O15259 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.71■□□□□ 0.59
NPHP1O15259 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.71■□□□□ 0.59
NPHP1O15259 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
NPHP1O15259 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC18.71■□□□□ 0.59
NPHP1O15259 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
NPHP1O15259 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPHP1O15259 AC012508.2-201ENST00000567613 1472 ntBASIC18.71■□□□□ 0.59
NPHP1O15259 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC18.7■□□□□ 0.58
NPHP1O15259 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NPHP1O15259 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
NPHP1O15259 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NPHP1O15259 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NPHP1O15259 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NPHP1O15259 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NPHP1O15259 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.7■□□□□ 0.58
NPHP1O15259 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NPHP1O15259 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC18.7■□□□□ 0.58
NPHP1O15259 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
NPHP1O15259 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NPHP1O15259 AC026316.1-201ENST00000398900 414 ntBASIC18.7■□□□□ 0.58
NPHP1O15259 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NPHP1O15259 RN7SL8P-201ENST00000461771 266 ntBASIC18.7■□□□□ 0.58
NPHP1O15259 RN7SL181P-201ENST00000462921 277 ntBASIC18.7■□□□□ 0.58
NPHP1O15259 HLA-J-204ENST00000495278 958 ntBASIC18.7■□□□□ 0.58
NPHP1O15259 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NPHP1O15259 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC18.7■□□□□ 0.58
NPHP1O15259 SCARNA21-201ENST00000517026 139 ntBASIC18.7■□□□□ 0.58
NPHP1O15259 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NPHP1O15259 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC18.7■□□□□ 0.58
NPHP1O15259 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC18.7■□□□□ 0.58
NPHP1O15259 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC18.7■□□□□ 0.58
NPHP1O15259 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC18.7■□□□□ 0.58
NPHP1O15259 AL805961.1-201ENST00000642026 753 ntBASIC18.7■□□□□ 0.58
NPHP1O15259 CDK12-201ENST00000430627 5918 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NPHP1O15259 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
NPHP1O15259 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
NPHP1O15259 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
NPHP1O15259 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC18.7■□□□□ 0.58
NPHP1O15259 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
NPHP1O15259 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.69■□□□□ 0.58
NPHP1O15259 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
NPHP1O15259 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.69■□□□□ 0.58
NPHP1O15259 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC18.69■□□□□ 0.58
NPHP1O15259 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC18.69■□□□□ 0.58
NPHP1O15259 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.69■□□□□ 0.58
NPHP1O15259 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.69■□□□□ 0.58
NPHP1O15259 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
NPHP1O15259 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NPHP1O15259 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC18.69■□□□□ 0.58
NPHP1O15259 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms