Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 AC123567.1-201ENST00000548294 1261 ntBASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 AC120045.2-201ENST00000567334 178 ntBASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 AL132655.2-201ENST00000596276 594 ntBASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 AC093726.1-201ENST00000608064 963 ntBASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 AC055811.4-201ENST00000624039 1754 ntBASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 PCM1-202ENST00000327578 8287 ntTSL 5 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 AC092506.1-201ENST00000634580 2275 ntTSL 5 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC13.09□□□□□ -0.31
RHBDD3Q9Y3P4 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.08□□□□□ -0.31
RHBDD3Q9Y3P4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
RHBDD3Q9Y3P4 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC13.08□□□□□ -0.31
RHBDD3Q9Y3P4 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
RHBDD3Q9Y3P4 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.08□□□□□ -0.31
RHBDD3Q9Y3P4 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
RHBDD3Q9Y3P4 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
RHBDD3Q9Y3P4 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
RHBDD3Q9Y3P4 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 MIR661-201ENST00000384842 89 ntBASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 AC098850.1-201ENST00000419919 790 ntBASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 HLA-K-203ENST00000430151 1046 ntBASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 BCRP1-201ENST00000444246 691 ntBASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 AC092552.1-201ENST00000547243 906 ntBASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 CHCHD2P3-201ENST00000603038 451 ntBASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 CPSF7-205ENST00000439958 3524 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 AL137783.1-201ENST00000623494 1896 ntBASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.08□□□□□ -0.32
RHBDD3Q9Y3P4 FGFR3-201ENST00000260795 4132 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 PRPF8-205ENST00000572621 7445 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 NUCB1-201ENST00000405315 2668 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
RHBDD3Q9Y3P4 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms