Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 MESTP3-201ENST00000503460 968 ntBASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 AP001063.1-201ENST00000568332 529 ntBASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 BX088702.1-201ENST00000610784 235 ntBASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 C9orf152-201ENST00000400613 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 AC020915.4-201ENST00000597230 2708 ntTSL 2 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC16.22■□□□□ 0.19
LIMA1Q9UHB6 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 MAPT-IT1-201ENST00000624111 3016 ntBASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 AC022137.2-201ENST00000503482 481 ntBASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 KRT18P25-201ENST00000508931 1278 ntBASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 SORD2P-201ENST00000558556 1069 ntBASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 CHCHD2P3-201ENST00000603038 451 ntBASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LIMA1Q9UHB6 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LIMA1Q9UHB6 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.21■□□□□ 0.18
LIMA1Q9UHB6 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC16.21■□□□□ 0.18
LIMA1Q9UHB6 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LIMA1Q9UHB6 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.21■□□□□ 0.18
LIMA1Q9UHB6 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LIMA1Q9UHB6 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMA1Q9UHB6 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMA1Q9UHB6 CLUHP2-201ENST00000426660 1303 ntBASIC16.2■□□□□ 0.18
LIMA1Q9UHB6 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC16.2■□□□□ 0.18
LIMA1Q9UHB6 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIMA1Q9UHB6 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMA1Q9UHB6 LSS-211ENST00000522411 2523 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMA1Q9UHB6 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.2■□□□□ 0.18
LIMA1Q9UHB6 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LIMA1Q9UHB6 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms