Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC15.71■□□□□ 0.11
PAAF1Q9BRP4 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
PAAF1Q9BRP4 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PAAF1Q9BRP4 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PAAF1Q9BRP4 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PAAF1Q9BRP4 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PAAF1Q9BRP4 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
PAAF1Q9BRP4 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PAAF1Q9BRP4 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PAAF1Q9BRP4 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 AC104640.1-201ENST00000562617 2109 ntBASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 LINC01165-201ENST00000445190 1623 ntBASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 UFM1-202ENST00000379649 846 ntTSL 4 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 XBP1P1-201ENST00000436573 652 ntBASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 CCNC-217ENST00000523985 958 ntTSL 2 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 IRF3-215ENST00000596822 823 ntTSL 3 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 AC007718.1-201ENST00000621078 280 ntBASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 KHSRPP1-201ENST00000427983 1768 ntBASIC15.7■□□□□ 0.1
PAAF1Q9BRP4 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 AC015688.4-201ENST00000580780 1647 ntBASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 OR2K2-202ENST00000374428 1038 ntBASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 AC234782.1-201ENST00000451950 919 ntBASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 PGRMC2-206ENST00000512483 1144 ntTSL 5 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 AC084346.1-201ENST00000520962 528 ntTSL 4 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC15.69■□□□□ 0.1
PAAF1Q9BRP4 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms