Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HTR3D-201ENST00000334128 1459 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 AL359458.1-201ENST00000430821 400 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 AP003040.1-201ENST00000532044 1024 ntBASIC14.26□□□□□ -0.13
VPS13AQ96RL7 AL132994.1-201ENST00000554098 400 ntBASIC14.26□□□□□ -0.13
VPS13AQ96RL7 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 AC025594.1-201ENST00000469533 543 ntBASIC14.25□□□□□ -0.13
VPS13AQ96RL7 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 IDH3A-213ENST00000559205 566 ntTSL 4 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 RN7SL602P-201ENST00000578326 324 ntBASIC14.25□□□□□ -0.13
VPS13AQ96RL7 RN7SL718P-201ENST00000581254 303 ntBASIC14.25□□□□□ -0.13
VPS13AQ96RL7 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 AC018529.2-202ENST00000611482 3087 ntBASIC14.25□□□□□ -0.13
VPS13AQ96RL7 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 AC232323.1-201ENST00000540724 2099 ntBASIC14.25□□□□□ -0.13
VPS13AQ96RL7 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 ANKRD26P1-203ENST00000569528 966 ntBASIC14.25□□□□□ -0.13
VPS13AQ96RL7 RN7SL121P-201ENST00000584223 273 ntBASIC14.25□□□□□ -0.13
VPS13AQ96RL7 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
VPS13AQ96RL7 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 KHSRPP1-201ENST00000427983 1768 ntBASIC14.24□□□□□ -0.13
VPS13AQ96RL7 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 JTB-202ENST00000356648 1040 ntTSL 2 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 RN7SL277P-201ENST00000481521 288 ntBASIC14.24□□□□□ -0.13
VPS13AQ96RL7 NAA40-205ENST00000539656 577 ntTSL 4 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 AC005274.1-201ENST00000623460 802 ntBASIC14.24□□□□□ -0.13
VPS13AQ96RL7 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 ATF4-202ENST00000396680 1419 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 CLEC10A-206ENST00000576617 1800 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 HLA-DMA-202ENST00000395303 1007 ntBASIC14.24□□□□□ -0.13
VPS13AQ96RL7 KRT18P4-201ENST00000422599 1288 ntBASIC14.24□□□□□ -0.13
VPS13AQ96RL7 RBPMSLP-201ENST00000433427 502 ntBASIC14.24□□□□□ -0.13
VPS13AQ96RL7 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 BMF-206ENST00000558774 671 ntTSL 3 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 YWHAE-212ENST00000575977 540 ntTSL 2 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 GPN3-203ENST00000543199 1604 ntTSL 5 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 CHI3L1-201ENST00000255409 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 SKOR2-201ENST00000400404 891 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC14.24□□□□□ -0.13
VPS13AQ96RL7 MIR4746-201ENST00000579802 71 ntBASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms