Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AC006001.1-201ENST00000325130 474 ntBASIC11.5□□□□□ -0.57
CCDC140Q96MF4 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 LINC00685-201ENST00000391707 428 ntTSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 BOLA2P3-201ENST00000404566 256 ntBASIC11.5□□□□□ -0.57
CCDC140Q96MF4 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AC004945.1-201ENST00000416738 983 ntBASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 U91328.1-201ENST00000437528 223 ntBASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AC234783.1-201ENST00000441761 496 ntBASIC11.5□□□□□ -0.57
CCDC140Q96MF4 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 ALG3P1-201ENST00000508806 1114 ntBASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AHRR-211ENST00000515206 462 ntTSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AP000812.2-201ENST00000538934 718 ntBASIC11.5□□□□□ -0.57
CCDC140Q96MF4 KRT17P8-201ENST00000540749 863 ntBASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AC073413.1-201ENST00000603927 732 ntBASIC11.5□□□□□ -0.57
CCDC140Q96MF4 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AL162274.1-201ENST00000617191 1098 ntBASIC11.5□□□□□ -0.57
CCDC140Q96MF4 RHOXF1P1-202ENST00000635473 501 ntBASIC11.5□□□□□ -0.57
CCDC140Q96MF4 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC11.5□□□□□ -0.57
CCDC140Q96MF4 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 RPL7P3-201ENST00000441388 714 ntBASIC11.49□□□□□ -0.57
CCDC140Q96MF4 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 CDC23-208ENST00000505120 455 ntTSL 3 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 COX5BP1-201ENST00000507622 393 ntBASIC11.49□□□□□ -0.57
CCDC140Q96MF4 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 RN7SL713P-201ENST00000582127 302 ntBASIC11.49□□□□□ -0.57
CCDC140Q96MF4 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 BX088702.1-201ENST00000610784 235 ntBASIC11.49□□□□□ -0.57
CCDC140Q96MF4 WNT11-204ENST00000621122 789 ntTSL 5 BASIC11.49□□□□□ -0.57
CCDC140Q96MF4 AP001002.3-201ENST00000623482 206 ntBASIC11.49□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms