Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 SSR4P1-203ENST00000599569 2260 ntBASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 RPL13AP20-201ENST00000459725 609 ntBASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 USB1-203ENST00000539737 1212 ntTSL 2 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 DUX4L45-201ENST00000566406 1057 ntBASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 RN7SL48P-201ENST00000579283 293 ntBASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 AC006453.4-201ENST00000636949 1252 ntBASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 KRT8P14-201ENST00000414254 1442 ntBASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
CLIP3Q96DZ5 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 AC022494.1-201ENST00000466044 728 ntBASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 AGER-214ENST00000538695 487 ntTSL 2 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 DERL2-202ENST00000570848 657 ntTSL 5 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 CICP11-201ENST00000434745 2827 ntBASIC14.47□□□□□ -0.09
CLIP3Q96DZ5 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 AC005089.1-201ENST00000619486 2241 ntBASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 OLR1-203ENST00000432556 950 ntTSL 2 BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 AC022616.1-201ENST00000518688 554 ntBASIC14.46□□□□□ -0.09
CLIP3Q96DZ5 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms