Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 FP236241.2-201ENST00000624906 1185 ntBASIC16.94■□□□□ 0.3
ATL3Q6DD88 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
ATL3Q6DD88 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC16.94■□□□□ 0.3
ATL3Q6DD88 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATL3Q6DD88 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATL3Q6DD88 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ATL3Q6DD88 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
ATL3Q6DD88 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATL3Q6DD88 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATL3Q6DD88 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATL3Q6DD88 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
ATL3Q6DD88 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATL3Q6DD88 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATL3Q6DD88 AC090643.2-201ENST00000623442 2029 ntBASIC16.94■□□□□ 0.3
ATL3Q6DD88 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATL3Q6DD88 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
ATL3Q6DD88 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ATL3Q6DD88 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC16.94■□□□□ 0.3
ATL3Q6DD88 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
ATL3Q6DD88 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
ATL3Q6DD88 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 LINC02396-202ENST00000550636 2324 ntTSL 2 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 ARMCX1-201ENST00000372829 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 AC016876.1-201ENST00000415124 352 ntTSL 3 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 FAM207CP-201ENST00000443486 507 ntBASIC16.93■□□□□ 0.3
ATL3Q6DD88 UGT1A2P-201ENST00000454886 866 ntBASIC16.93■□□□□ 0.3
ATL3Q6DD88 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 AP000593.2-201ENST00000542775 1433 ntBASIC16.93■□□□□ 0.3
ATL3Q6DD88 HSPA8P5-201ENST00000456928 2069 ntBASIC16.93■□□□□ 0.3
ATL3Q6DD88 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC16.93■□□□□ 0.3
ATL3Q6DD88 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
ATL3Q6DD88 POLM-202ENST00000335195 2444 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 PNKD-204ENST00000436005 978 ntTSL 5 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 PUDPP3-201ENST00000445368 636 ntBASIC16.92■□□□□ 0.3
ATL3Q6DD88 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 API5-211ENST00000534695 560 ntTSL 5 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 PAM16-204ENST00000571941 674 ntTSL 3 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 AJ011932.1-201ENST00000621707 465 ntBASIC16.92■□□□□ 0.3
ATL3Q6DD88 ENPP7P14-201ENST00000621765 1040 ntBASIC16.92■□□□□ 0.3
ATL3Q6DD88 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 SMAD2-212ENST00000591214 1714 ntTSL 2 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
ATL3Q6DD88 DDC-AS1-201ENST00000454521 1776 ntTSL 2 BASIC16.92■□□□□ 0.3
ATL3Q6DD88 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms