Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.12■□□□□ 0.17
HTTP42858 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 MAD2L1BP-202ENST00000451025 1517 ntTSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 AL050341.2-201ENST00000567508 1541 ntBASIC16.12■□□□□ 0.17
HTTP42858 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 ABAT-203ENST00000425191 1923 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 LINC00265-2P-201ENST00000413372 782 ntBASIC16.12■□□□□ 0.17
HTTP42858 TIMM10-202ENST00000525158 530 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HTTP42858 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC16.12■□□□□ 0.17
HTTP42858 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
HTTP42858 F10-203ENST00000409306 1450 ntTSL 3 BASIC16.11■□□□□ 0.17
HTTP42858 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HTTP42858 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
HTTP42858 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HTTP42858 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HTTP42858 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.11■□□□□ 0.17
HTTP42858 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
HTTP42858 SIRPB3P-201ENST00000340424 1216 ntBASIC16.11■□□□□ 0.17
HTTP42858 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC16.11■□□□□ 0.17
HTTP42858 AP000354.1-201ENST00000396982 456 ntBASIC16.11■□□□□ 0.17
HTTP42858 PSAT1P2-201ENST00000426107 972 ntBASIC16.11■□□□□ 0.17
HTTP42858 RN7SL556P-201ENST00000582856 298 ntBASIC16.11■□□□□ 0.17
HTTP42858 ESR1-214ENST00000638569 132 ntTSL 5 BASIC16.11■□□□□ 0.17
HTTP42858 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.11■□□□□ 0.17
HTTP42858 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HTTP42858 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HTTP42858 AC062028.1-201ENST00000536743 1422 ntTSL 5 BASIC16.11■□□□□ 0.17
HTTP42858 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
HTTP42858 CCL5-201ENST00000603197 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HTTP42858 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.11■□□□□ 0.17
HTTP42858 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
HTTP42858 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HTTP42858 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HTTP42858 KRTAP10-9-201ENST00000397911 1171 ntAPPRIS P2 BASIC16.11■□□□□ 0.17
HTTP42858 RN7SL523P-201ENST00000484401 298 ntBASIC16.11■□□□□ 0.17
HTTP42858 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC16.11■□□□□ 0.17
HTTP42858 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC16.11■□□□□ 0.17
HTTP42858 CES1P2-201ENST00000566467 1242 ntBASIC16.11■□□□□ 0.17
HTTP42858 AL136982.5-201ENST00000605222 294 ntBASIC16.11■□□□□ 0.17
HTTP42858 AL357143.1-203ENST00000639750 881 ntBASIC16.11■□□□□ 0.17
HTTP42858 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC16.11■□□□□ 0.17
HTTP42858 PCDHGB8P-201ENST00000502926 1973 ntBASIC16.11■□□□□ 0.17
HTTP42858 AC009093.10-201ENST00000641956 1442 ntBASIC16.11■□□□□ 0.17
HTTP42858 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.11■□□□□ 0.17
HTTP42858 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
HTTP42858 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HTTP42858 GYG2-201ENST00000353656 1293 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
HTTP42858 AL773545.2-201ENST00000442149 472 ntBASIC16.1■□□□□ 0.17
HTTP42858 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC16.1■□□□□ 0.17
HTTP42858 EEF1GP8-201ENST00000506566 1154 ntBASIC16.1■□□□□ 0.17
HTTP42858 NPAS3-209ENST00000551008 1002 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 AC079414.2-201ENST00000567157 1104 ntBASIC16.1■□□□□ 0.17
HTTP42858 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.1■□□□□ 0.17
HTTP42858 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC16.1■□□□□ 0.17
HTTP42858 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC16.1■□□□□ 0.17
HTTP42858 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.1■□□□□ 0.17
HTTP42858 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.1■□□□□ 0.17
HTTP42858 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
HTTP42858 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 PDXDC2P-206ENST00000534700 1315 ntBASIC16.1■□□□□ 0.17
HTTP42858 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC16.1■□□□□ 0.17
HTTP42858 SIX3-AS1-201ENST00000419364 844 ntTSL 2 BASIC16.1■□□□□ 0.17
HTTP42858 AL157871.1-201ENST00000555428 429 ntTSL 3 BASIC16.1■□□□□ 0.17
HTTP42858 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC16.1■□□□□ 0.17
HTTP42858 ANXA8L1-206ENST00000619162 1109 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.1■□□□□ 0.17
HTTP42858 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC16.1■□□□□ 0.17
HTTP42858 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.1■□□□□ 0.17
HTTP42858 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
HTTP42858 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HTTP42858 KRTAP4-12-201ENST00000394014 1077 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
HTTP42858 TRBC2-201ENST00000466254 758 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
HTTP42858 AC092910.2-201ENST00000491262 348 ntBASIC16.1■□□□□ 0.17
HTTP42858 RN7SL767P-201ENST00000493013 295 ntBASIC16.1■□□□□ 0.17
HTTP42858 AC008026.2-201ENST00000495438 348 ntBASIC16.1■□□□□ 0.17
HTTP42858 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms