Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CIITAP33076 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CIITAP33076 AC004899.1-201ENST00000424687 1714 ntBASIC16.65■□□□□ 0.26
CIITAP33076 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
CIITAP33076 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.64■□□□□ 0.25
CIITAP33076 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC16.64■□□□□ 0.25
CIITAP33076 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC16.64■□□□□ 0.25
CIITAP33076 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 GPAA1P2-201ENST00000417923 928 ntBASIC16.64■□□□□ 0.25
CIITAP33076 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.64■□□□□ 0.25
CIITAP33076 RPL18P13-201ENST00000478088 569 ntBASIC16.64■□□□□ 0.25
CIITAP33076 HLA-J-204ENST00000495278 958 ntBASIC16.64■□□□□ 0.25
CIITAP33076 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 AL160314.3-201ENST00000556041 767 ntBASIC16.64■□□□□ 0.25
CIITAP33076 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC16.64■□□□□ 0.25
CIITAP33076 RPL35-206ENST00000629845 340 ntTSL 5 BASIC16.64■□□□□ 0.25
CIITAP33076 AC068587.8-201ENST00000641239 219 ntBASIC16.64■□□□□ 0.25
CIITAP33076 AC004923.1-202ENST00000642106 209 ntBASIC16.64■□□□□ 0.25
CIITAP33076 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CIITAP33076 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC16.64■□□□□ 0.25
CIITAP33076 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC16.64■□□□□ 0.25
CIITAP33076 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CIITAP33076 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC16.64■□□□□ 0.25
CIITAP33076 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC16.64■□□□□ 0.25
CIITAP33076 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.64■□□□□ 0.25
CIITAP33076 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.64■□□□□ 0.25
CIITAP33076 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CIITAP33076 UNKL-201ENST00000248104 4320 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC16.64■□□□□ 0.25
CIITAP33076 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
CIITAP33076 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CIITAP33076 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.63■□□□□ 0.25
CIITAP33076 KRT8P13-201ENST00000463294 1010 ntBASIC16.63■□□□□ 0.25
CIITAP33076 AC091804.1-201ENST00000486888 567 ntBASIC16.63■□□□□ 0.25
CIITAP33076 AC022447.6-201ENST00000515522 438 ntBASIC16.63■□□□□ 0.25
CIITAP33076 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC16.63■□□□□ 0.25
CIITAP33076 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC16.63■□□□□ 0.25
CIITAP33076 AP001258.2-201ENST00000529891 490 ntBASIC16.63■□□□□ 0.25
CIITAP33076 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.63■□□□□ 0.25
CIITAP33076 RN7SL163P-201ENST00000583100 276 ntBASIC16.63■□□□□ 0.25
CIITAP33076 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CIITAP33076 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 MVK-214ENST00000629016 1591 ntTSL 5 BASIC16.63■□□□□ 0.25
CIITAP33076 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CIITAP33076 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC16.62■□□□□ 0.25
CIITAP33076 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC16.62■□□□□ 0.25
CIITAP33076 LINC01648-201ENST00000445180 1519 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC16.62■□□□□ 0.25
CIITAP33076 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC16.62■□□□□ 0.25
CIITAP33076 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC16.62■□□□□ 0.25
CIITAP33076 HNRNPA1P32-201ENST00000396326 963 ntBASIC16.62■□□□□ 0.25
CIITAP33076 NKAIN1P1-201ENST00000435754 582 ntBASIC16.62■□□□□ 0.25
CIITAP33076 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CIITAP33076 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC16.62■□□□□ 0.25
CIITAP33076 AC044849.1-201ENST00000519737 1188 ntBASIC16.62■□□□□ 0.25
CIITAP33076 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms