Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC13.67□□□□□ -0.22
MSX1P28360 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX1P28360 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.67□□□□□ -0.22
MSX1P28360 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX1P28360 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC13.67□□□□□ -0.22
MSX1P28360 ZNF767P-206ENST00000513792 565 ntBASIC13.67□□□□□ -0.22
MSX1P28360 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.67□□□□□ -0.22
MSX1P28360 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX1P28360 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 AL139317.3-201ENST00000555969 898 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX1P28360 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC13.67□□□□□ -0.22
MSX1P28360 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX1P28360 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.67□□□□□ -0.22
MSX1P28360 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC13.67□□□□□ -0.22
MSX1P28360 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
MSX1P28360 SALL4P5-201ENST00000419001 1760 ntBASIC13.67□□□□□ -0.22
MSX1P28360 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.67□□□□□ -0.22
MSX1P28360 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
MSX1P28360 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
MSX1P28360 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC13.67□□□□□ -0.22
MSX1P28360 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 AL138725.1-201ENST00000407347 1314 ntBASIC13.66□□□□□ -0.22
MSX1P28360 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC13.66□□□□□ -0.22
MSX1P28360 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
MSX1P28360 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.66□□□□□ -0.22
MSX1P28360 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC13.66□□□□□ -0.22
MSX1P28360 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC13.66□□□□□ -0.22
MSX1P28360 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
MSX1P28360 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.66□□□□□ -0.22
MSX1P28360 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
MSX1P28360 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC13.66□□□□□ -0.22
MSX1P28360 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.66□□□□□ -0.22
MSX1P28360 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
MSX1P28360 AGER-203ENST00000375065 665 ntTSL 2 BASIC13.66□□□□□ -0.22
MSX1P28360 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.66□□□□□ -0.22
MSX1P28360 AC004945.1-201ENST00000416738 983 ntBASIC13.66□□□□□ -0.22
MSX1P28360 FAM197Y7-201ENST00000432892 766 ntBASIC13.66□□□□□ -0.22
MSX1P28360 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC13.66□□□□□ -0.22
MSX1P28360 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.66□□□□□ -0.22
MSX1P28360 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC13.66□□□□□ -0.22
MSX1P28360 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.66□□□□□ -0.22
MSX1P28360 AC068672.2-201ENST00000524022 336 ntTSL 3 BASIC13.66□□□□□ -0.22
MSX1P28360 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC13.66□□□□□ -0.22
MSX1P28360 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.66□□□□□ -0.22
MSX1P28360 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC13.66□□□□□ -0.22
MSX1P28360 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC13.66□□□□□ -0.22
MSX1P28360 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC13.66□□□□□ -0.22
MSX1P28360 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.66□□□□□ -0.22
MSX1P28360 AC004466.1-201ENST00000599515 1080 ntBASIC13.66□□□□□ -0.22
MSX1P28360 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC13.66□□□□□ -0.22
MSX1P28360 AL118558.3-201ENST00000607414 1079 ntBASIC13.66□□□□□ -0.22
MSX1P28360 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC13.66□□□□□ -0.22
MSX1P28360 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 AC138951.2-201ENST00000623455 1161 ntBASIC13.66□□□□□ -0.22
MSX1P28360 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC13.66□□□□□ -0.22
MSX1P28360 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
MSX1P28360 AC003102.2-201ENST00000589195 1469 ntBASIC13.66□□□□□ -0.22
MSX1P28360 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC13.66□□□□□ -0.22
MSX1P28360 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.66□□□□□ -0.22
MSX1P28360 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.65□□□□□ -0.22
MSX1P28360 FKBP4P6-201ENST00000457486 1332 ntBASIC13.65□□□□□ -0.22
MSX1P28360 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC13.65□□□□□ -0.22
MSX1P28360 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
MSX1P28360 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC13.65□□□□□ -0.22
MSX1P28360 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
MSX1P28360 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
MSX1P28360 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.65□□□□□ -0.22
MSX1P28360 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms