Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-2O95096 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC13.69□□□□□ -0.22
NKX2-2O95096 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC13.69□□□□□ -0.22
NKX2-2O95096 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.69□□□□□ -0.22
NKX2-2O95096 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-2O95096 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-2O95096 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-2O95096 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-2O95096 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC13.69□□□□□ -0.22
NKX2-2O95096 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
NKX2-2O95096 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.69□□□□□ -0.22
NKX2-2O95096 AC006504.5-208ENST00000588784 2401 ntBASIC13.69□□□□□ -0.22
NKX2-2O95096 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.69□□□□□ -0.22
NKX2-2O95096 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.68□□□□□ -0.22
NKX2-2O95096 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
NKX2-2O95096 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX2-2O95096 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
NKX2-2O95096 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX2-2O95096 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
NKX2-2O95096 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
NKX2-2O95096 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 AC152010.1-201ENST00000415779 2006 ntBASIC13.68□□□□□ -0.22
NKX2-2O95096 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
NKX2-2O95096 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX2-2O95096 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
NKX2-2O95096 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-2O95096 PGF-202ENST00000405431 666 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-2O95096 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 AC005034.1-201ENST00000426657 489 ntBASIC13.68□□□□□ -0.22
NKX2-2O95096 AC234783.1-201ENST00000441761 496 ntBASIC13.68□□□□□ -0.22
NKX2-2O95096 CHMP1AP1-201ENST00000445563 662 ntBASIC13.68□□□□□ -0.22
NKX2-2O95096 KLF2P4-201ENST00000451959 1225 ntBASIC13.68□□□□□ -0.22
NKX2-2O95096 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 NAA50-208ENST00000497255 789 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-2O95096 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.68□□□□□ -0.22
NKX2-2O95096 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 RAB43P1-201ENST00000561790 589 ntBASIC13.68□□□□□ -0.22
NKX2-2O95096 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX2-2O95096 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-2O95096 AL358472.3-201ENST00000608147 415 ntBASIC13.68□□□□□ -0.22
NKX2-2O95096 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 WNT11-204ENST00000621122 789 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-2O95096 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC13.68□□□□□ -0.22
NKX2-2O95096 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC13.68□□□□□ -0.22
NKX2-2O95096 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC13.68□□□□□ -0.22
NKX2-2O95096 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
NKX2-2O95096 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
NKX2-2O95096 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
NKX2-2O95096 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC13.67□□□□□ -0.22
NKX2-2O95096 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.67□□□□□ -0.22
NKX2-2O95096 AC063926.2-201ENST00000623766 1308 ntBASIC13.67□□□□□ -0.22
NKX2-2O95096 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC13.67□□□□□ -0.22
NKX2-2O95096 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
NKX2-2O95096 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC13.67□□□□□ -0.22
NKX2-2O95096 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.67□□□□□ -0.22
NKX2-2O95096 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
NKX2-2O95096 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC13.67□□□□□ -0.22
NKX2-2O95096 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC13.67□□□□□ -0.22
NKX2-2O95096 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC13.67□□□□□ -0.22
NKX2-2O95096 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
NKX2-2O95096 CNN2P10-201ENST00000443067 918 ntBASIC13.67□□□□□ -0.22
NKX2-2O95096 AL355994.2-201ENST00000447882 704 ntBASIC13.67□□□□□ -0.22
NKX2-2O95096 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC13.67□□□□□ -0.22
NKX2-2O95096 CTBP2P5-201ENST00000454986 1264 ntBASIC13.67□□□□□ -0.22
NKX2-2O95096 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC13.67□□□□□ -0.22
NKX2-2O95096 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.67□□□□□ -0.22
NKX2-2O95096 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.67□□□□□ -0.22
NKX2-2O95096 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC13.67□□□□□ -0.22
NKX2-2O95096 PPY2P-201ENST00000582808 702 ntBASIC13.67□□□□□ -0.22
NKX2-2O95096 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
NKX2-2O95096 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms