Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 RN7SL752P-201ENST00000463779 287 ntBASIC14.22□□□□□ -0.13
BRF2Q9HAW0 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 AC025279.2-201ENST00000569730 653 ntBASIC14.22□□□□□ -0.13
BRF2Q9HAW0 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.22□□□□□ -0.13
BRF2Q9HAW0 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 AC139712.1-201ENST00000378256 1875 ntBASIC14.21□□□□□ -0.13
BRF2Q9HAW0 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 RN7SL837P-201ENST00000463010 287 ntBASIC14.21□□□□□ -0.13
BRF2Q9HAW0 AC106760.1-201ENST00000508690 800 ntBASIC14.21□□□□□ -0.13
BRF2Q9HAW0 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 GNRHR2-203ENST00000581100 1187 ntBASIC14.21□□□□□ -0.13
BRF2Q9HAW0 AC025048.6-201ENST00000634326 1161 ntBASIC14.21□□□□□ -0.13
BRF2Q9HAW0 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 AC108134.1-201ENST00000382225 3061 ntTSL 2 BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
BRF2Q9HAW0 RN7SL832P-201ENST00000607781 1756 ntBASIC14.21□□□□□ -0.13
BRF2Q9HAW0 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
BRF2Q9HAW0 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
BRF2Q9HAW0 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
BRF2Q9HAW0 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
BRF2Q9HAW0 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.21□□□□□ -0.14
BRF2Q9HAW0 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
BRF2Q9HAW0 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
BRF2Q9HAW0 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
BRF2Q9HAW0 AC020910.5-201ENST00000623668 1865 ntBASIC14.21□□□□□ -0.14
BRF2Q9HAW0 INE2-201ENST00000630399 1874 ntBASIC14.21□□□□□ -0.14
BRF2Q9HAW0 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 SPOCK3-226ENST00000541354 2797 ntTSL 2 BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 TP73-213ENST00000604479 1623 ntTSL 5 BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
BRF2Q9HAW0 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms