Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 AC015912.3-201ENST00000619432 348 ntBASIC14.28□□□□□ -0.12
VPS13AQ96RL7 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 AC139713.2-207ENST00000641556 1292 ntBASIC14.28□□□□□ -0.12
VPS13AQ96RL7 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 KIR3DL2-201ENST00000270442 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 ATP5J-204ENST00000400093 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 UBR5-AS1-202ENST00000520820 800 ntTSL 2 BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 KRT8P2-201ENST00000556193 944 ntBASIC14.27□□□□□ -0.12
VPS13AQ96RL7 KRT8P1-201ENST00000557533 1207 ntBASIC14.27□□□□□ -0.12
VPS13AQ96RL7 COQ4-204ENST00000608951 781 ntTSL 2 BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 AL450487.2-201ENST00000615934 407 ntBASIC14.27□□□□□ -0.12
VPS13AQ96RL7 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
VPS13AQ96RL7 AC020931.1-201ENST00000589622 1346 ntBASIC14.27□□□□□ -0.12
VPS13AQ96RL7 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 AL136172.1-201ENST00000598590 1394 ntBASIC14.27□□□□□ -0.13
VPS13AQ96RL7 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 NF1P11-201ENST00000621292 1282 ntBASIC14.27□□□□□ -0.13
VPS13AQ96RL7 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 KRT8P28-201ENST00000433288 1390 ntBASIC14.27□□□□□ -0.13
VPS13AQ96RL7 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 PAX7-202ENST00000400661 1700 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
VPS13AQ96RL7 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 MDS2-201ENST00000374555 1029 ntAPPRIS P5 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 SFMBT2-202ENST00000379711 692 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 AL663074.1-201ENST00000436642 299 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 DUX4L50-201ENST00000455245 715 ntBASIC14.26□□□□□ -0.13
VPS13AQ96RL7 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 TOR2A-202ENST00000373281 2477 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 GGTLC4P-201ENST00000402176 664 ntBASIC14.26□□□□□ -0.13
VPS13AQ96RL7 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 GOLGA6L16P-201ENST00000441780 1299 ntBASIC14.26□□□□□ -0.13
VPS13AQ96RL7 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 AC078814.4-201ENST00000546650 327 ntBASIC14.26□□□□□ -0.13
VPS13AQ96RL7 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 HYOU1-218ENST00000614668 1569 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
VPS13AQ96RL7 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms