Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 TDH-203ENST00000531764 1110 ntBASIC14.36□□□□□ -0.11
VMP1Q96GC9 PTP4A1P2-201ENST00000546033 454 ntBASIC14.36□□□□□ -0.11
VMP1Q96GC9 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 MIR5189-201ENST00000577370 114 ntBASIC14.36□□□□□ -0.11
VMP1Q96GC9 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.36□□□□□ -0.11
VMP1Q96GC9 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
VMP1Q96GC9 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 AP001582.1-201ENST00000525856 295 ntBASIC14.35□□□□□ -0.11
VMP1Q96GC9 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 AC005252.2-201ENST00000624630 1141 ntBASIC14.35□□□□□ -0.11
VMP1Q96GC9 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 CICP17-201ENST00000418553 2377 ntBASIC14.35□□□□□ -0.11
VMP1Q96GC9 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
VMP1Q96GC9 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
VMP1Q96GC9 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
VMP1Q96GC9 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC14.34□□□□□ -0.11
VMP1Q96GC9 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms