Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HMGB4Q8WW32 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 AC239868.1-201ENST00000369385 493 ntBASIC14.88□□□□□ -0.03
HMGB4Q8WW32 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 UQCRQ-203ENST00000378670 839 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 AC018635.2-201ENST00000608625 364 ntBASIC14.88□□□□□ -0.03
HMGB4Q8WW32 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 AC105917.1-201ENST00000506637 2539 ntBASIC14.88□□□□□ -0.03
HMGB4Q8WW32 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.88□□□□□ -0.03
HMGB4Q8WW32 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 AC023024.2-201ENST00000623561 1993 ntBASIC14.87□□□□□ -0.03
HMGB4Q8WW32 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 AC020658.6-201ENST00000623564 1870 ntBASIC14.87□□□□□ -0.03
HMGB4Q8WW32 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 CCNC-217ENST00000523985 958 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 MBP-227ENST00000526111 581 ntTSL 4 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 RN7SL555P-201ENST00000584742 339 ntBASIC14.87□□□□□ -0.03
HMGB4Q8WW32 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 AC103691.2-201ENST00000618824 433 ntBASIC14.87□□□□□ -0.03
HMGB4Q8WW32 COX6A1P2-201ENST00000620597 330 ntBASIC14.87□□□□□ -0.03
HMGB4Q8WW32 AC007718.1-201ENST00000621078 280 ntBASIC14.87□□□□□ -0.03
HMGB4Q8WW32 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.87□□□□□ -0.03
HMGB4Q8WW32 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms