Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 AC023090.2-201ENST00000625182 2110 ntBASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 ANKRD19P-201ENST00000338192 862 ntBASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 MPV17-206ENST00000402722 827 ntTSL 3 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 AC007969.1-201ENST00000433675 447 ntBASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 KRT223P-202ENST00000449164 1292 ntBASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 AL590640.2-201ENST00000457038 527 ntBASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 AC008687.7-202ENST00000637404 953 ntBASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC13.81□□□□□ -0.2
NUP54Q7Z3B4 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 MIR1202-201ENST00000408529 83 ntBASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 FKBP4P6-201ENST00000457486 1332 ntBASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
NUP54Q7Z3B4 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms