Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 AC152010.1-201ENST00000415779 2006 ntBASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
ZNF549Q6P9A3 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ZNF549Q6P9A3 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.77□□□□□ -0.05
ZNF549Q6P9A3 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 AL136172.1-201ENST00000598590 1394 ntBASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 TAF8-203ENST00000372982 1805 ntTSL 2 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 AC092135.3-201ENST00000624151 1846 ntBASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 AC098614.1-201ENST00000368528 745 ntBASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 RN7SL752P-201ENST00000463779 287 ntBASIC14.76□□□□□ -0.05
ZNF549Q6P9A3 AL391280.1-201ENST00000506969 1062 ntBASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms