Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC14.13□□□□□ -0.15
LIM2P55344 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.13□□□□□ -0.15
LIM2P55344 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC14.13□□□□□ -0.15
LIM2P55344 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC14.13□□□□□ -0.15
LIM2P55344 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC14.13□□□□□ -0.15
LIM2P55344 OR10B1P-201ENST00000601666 907 ntBASIC14.13□□□□□ -0.15
LIM2P55344 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.13□□□□□ -0.15
LIM2P55344 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
LIM2P55344 MIR6775-201ENST00000617557 69 ntBASIC14.13□□□□□ -0.15
LIM2P55344 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.13□□□□□ -0.15
LIM2P55344 AAMP-202ENST00000420660 1761 ntTSL 2 BASIC14.13□□□□□ -0.15
LIM2P55344 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
LIM2P55344 AP000593.2-201ENST00000542775 1433 ntBASIC14.13□□□□□ -0.15
LIM2P55344 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC14.13□□□□□ -0.15
LIM2P55344 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
LIM2P55344 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
LIM2P55344 AC005840.4-201ENST00000541242 2494 ntBASIC14.13□□□□□ -0.15
LIM2P55344 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
LIM2P55344 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
LIM2P55344 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC14.12□□□□□ -0.15
LIM2P55344 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.12□□□□□ -0.15
LIM2P55344 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
LIM2P55344 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
LIM2P55344 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.12□□□□□ -0.15
LIM2P55344 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.12□□□□□ -0.15
LIM2P55344 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
LIM2P55344 AC041040.2-201ENST00000622926 2899 ntBASIC14.12□□□□□ -0.15
LIM2P55344 OS9-204ENST00000389146 2091 ntTSL 2 BASIC14.12□□□□□ -0.15
LIM2P55344 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
LIM2P55344 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.12□□□□□ -0.15
LIM2P55344 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 MPV17-206ENST00000402722 827 ntTSL 3 BASIC14.12□□□□□ -0.15
LIM2P55344 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 MIR1202-201ENST00000408529 83 ntBASIC14.12□□□□□ -0.15
LIM2P55344 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC14.12□□□□□ -0.15
LIM2P55344 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC14.12□□□□□ -0.15
LIM2P55344 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.12□□□□□ -0.15
LIM2P55344 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
LIM2P55344 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC14.12□□□□□ -0.15
LIM2P55344 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.12□□□□□ -0.15
LIM2P55344 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC14.12□□□□□ -0.15
LIM2P55344 AP003171.2-201ENST00000528208 925 ntBASIC14.12□□□□□ -0.15
LIM2P55344 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
LIM2P55344 ANGPTL8-203ENST00000591200 504 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC14.12□□□□□ -0.15
LIM2P55344 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
LIM2P55344 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
LIM2P55344 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC14.12□□□□□ -0.15
LIM2P55344 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC14.12□□□□□ -0.15
LIM2P55344 COQ7-209ENST00000569127 2575 ntTSL 2 BASIC14.12□□□□□ -0.15
LIM2P55344 AHCYP2-201ENST00000430630 1300 ntBASIC14.12□□□□□ -0.15
LIM2P55344 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.12□□□□□ -0.15
LIM2P55344 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.12□□□□□ -0.15
LIM2P55344 FAM47E-STBD1-204ENST00000515604 3029 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
LIM2P55344 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
LIM2P55344 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 CICP4-201ENST00000447359 2812 ntBASIC14.11□□□□□ -0.15
LIM2P55344 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC14.11□□□□□ -0.15
LIM2P55344 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
LIM2P55344 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms