Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH6P52701 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC20.16■□□□□ 0.82
MSH6P52701 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
MSH6P52701 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSH6P52701 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSH6P52701 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH6P52701 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH6P52701 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH6P52701 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSH6P52701 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC20.16■□□□□ 0.82
MSH6P52701 KCNK9-201ENST00000303015 1245 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH6P52701 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC20.16■□□□□ 0.82
MSH6P52701 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC20.16■□□□□ 0.82
MSH6P52701 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC20.16■□□□□ 0.82
MSH6P52701 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC20.16■□□□□ 0.82
MSH6P52701 SCARNA12-201ENST00000459155 270 ntBASIC20.16■□□□□ 0.82
MSH6P52701 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC20.16■□□□□ 0.82
MSH6P52701 KLF3-AS1-203ENST00000504219 627 ntTSL 3 BASIC20.16■□□□□ 0.82
MSH6P52701 CASP3-205ENST00000517513 964 ntTSL 5 BASIC20.16■□□□□ 0.82
MSH6P52701 AC090136.2-201ENST00000517809 420 ntBASIC20.16■□□□□ 0.82
MSH6P52701 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC20.16■□□□□ 0.82
MSH6P52701 MT2A-202ENST00000561491 581 ntTSL 2 BASIC20.16■□□□□ 0.82
MSH6P52701 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC20.16■□□□□ 0.82
MSH6P52701 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC20.16■□□□□ 0.82
MSH6P52701 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC20.16■□□□□ 0.82
MSH6P52701 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH6P52701 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSH6P52701 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC20.16■□□□□ 0.82
MSH6P52701 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSH6P52701 BSDC1-205ENST00000446293 1505 ntTSL 2 BASIC20.16■□□□□ 0.82
MSH6P52701 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC20.16■□□□□ 0.82
MSH6P52701 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 FUCA1P1-201ENST00000374476 1351 ntBASIC20.15■□□□□ 0.82
MSH6P52701 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC20.15■□□□□ 0.82
MSH6P52701 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC20.15■□□□□ 0.82
MSH6P52701 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
MSH6P52701 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC20.15■□□□□ 0.82
MSH6P52701 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC20.15■□□□□ 0.82
MSH6P52701 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC20.15■□□□□ 0.82
MSH6P52701 AC008741.2-201ENST00000612792 3115 ntBASIC20.15■□□□□ 0.82
MSH6P52701 AC008894.3-201ENST00000624324 3103 ntBASIC20.15■□□□□ 0.82
MSH6P52701 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
MSH6P52701 ST13P19-201ENST00000442505 1124 ntBASIC20.15■□□□□ 0.82
MSH6P52701 AC011247.2-201ENST00000457097 233 ntTSL 4 BASIC20.15■□□□□ 0.82
MSH6P52701 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC20.15■□□□□ 0.82
MSH6P52701 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC20.15■□□□□ 0.82
MSH6P52701 RN7SL564P-201ENST00000496309 250 ntBASIC20.15■□□□□ 0.82
MSH6P52701 HINT1-205ENST00000508488 703 ntTSL 2 BASIC20.15■□□□□ 0.82
MSH6P52701 CD164-210ENST00000512821 964 ntTSL 2 BASIC20.15■□□□□ 0.82
MSH6P52701 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC20.15■□□□□ 0.82
MSH6P52701 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC20.15■□□□□ 0.82
MSH6P52701 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 APOC1-209ENST00000592885 562 ntTSL 3 BASIC20.15■□□□□ 0.82
MSH6P52701 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 MS4A15-201ENST00000337911 1536 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
MSH6P52701 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 WIPI1-201ENST00000262139 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSH6P52701 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
MSH6P52701 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC20.15■□□□□ 0.82
MSH6P52701 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
MSH6P52701 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
MSH6P52701 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC20.14■□□□□ 0.82
MSH6P52701 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
MSH6P52701 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
MSH6P52701 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 SAT1-201ENST00000379251 801 ntTSL 2 BASIC20.14■□□□□ 0.81
MSH6P52701 SAT1-202ENST00000379253 909 ntTSL 2 BASIC20.14■□□□□ 0.81
MSH6P52701 SAT1-203ENST00000379254 868 ntTSL 3 BASIC20.14■□□□□ 0.81
MSH6P52701 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC20.14■□□□□ 0.81
MSH6P52701 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC20.14■□□□□ 0.81
MSH6P52701 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC20.14■□□□□ 0.81
MSH6P52701 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC20.14■□□□□ 0.81
MSH6P52701 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 CICP13-201ENST00000422015 2789 ntBASIC20.14■□□□□ 0.81
MSH6P52701 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC20.14■□□□□ 0.81
MSH6P52701 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
MSH6P52701 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
MSH6P52701 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
MSH6P52701 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC20.14■□□□□ 0.81
MSH6P52701 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
MSH6P52701 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC20.14■□□□□ 0.81
MSH6P52701 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
MSH6P52701 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms