Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 COMP-201ENST00000222271 2461 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
RFX3P48380 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.08□□□□□ -0.15
RFX3P48380 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
RFX3P48380 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC14.08□□□□□ -0.16
RFX3P48380 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
RFX3P48380 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC14.08□□□□□ -0.16
RFX3P48380 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 SLC9A8-201ENST00000361573 6094 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.08□□□□□ -0.16
RFX3P48380 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.08□□□□□ -0.16
RFX3P48380 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.08□□□□□ -0.16
RFX3P48380 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC14.08□□□□□ -0.16
RFX3P48380 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.08□□□□□ -0.16
RFX3P48380 RN7SL752P-201ENST00000463779 287 ntBASIC14.08□□□□□ -0.16
RFX3P48380 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC14.08□□□□□ -0.16
RFX3P48380 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.08□□□□□ -0.16
RFX3P48380 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.08□□□□□ -0.16
RFX3P48380 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.08□□□□□ -0.16
RFX3P48380 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC14.08□□□□□ -0.16
RFX3P48380 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.08□□□□□ -0.16
RFX3P48380 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 MIR3197-201ENST00000582241 73 ntBASIC14.08□□□□□ -0.16
RFX3P48380 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.08□□□□□ -0.16
RFX3P48380 AC005252.2-201ENST00000624630 1141 ntBASIC14.08□□□□□ -0.16
RFX3P48380 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
RFX3P48380 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 AC117489.1-201ENST00000625169 3217 ntBASIC14.08□□□□□ -0.16
RFX3P48380 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
RFX3P48380 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
RFX3P48380 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.08□□□□□ -0.16
RFX3P48380 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RFX3P48380 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
RFX3P48380 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
RFX3P48380 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC14.07□□□□□ -0.16
RFX3P48380 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
RFX3P48380 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
RFX3P48380 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 NUS1P3-201ENST00000423502 862 ntBASIC14.07□□□□□ -0.16
RFX3P48380 RN7SL692P-201ENST00000464677 288 ntBASIC14.07□□□□□ -0.16
RFX3P48380 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.07□□□□□ -0.16
RFX3P48380 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.07□□□□□ -0.16
RFX3P48380 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
RFX3P48380 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 XPOT-201ENST00000332707 6414 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
RFX3P48380 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC14.07□□□□□ -0.16
RFX3P48380 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms