Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.41■□□□□ 0.38
BRCA1P38398 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
BRCA1P38398 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
BRCA1P38398 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC17.41■□□□□ 0.38
BRCA1P38398 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 LPCAT4-209ENST00000617710 1719 ntTSL 5 BASIC17.41■□□□□ 0.38
BRCA1P38398 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 ALDH3A1-201ENST00000225740 1779 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC17.41■□□□□ 0.38
BRCA1P38398 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 CCL25-202ENST00000315626 450 ntTSL 2 BASIC17.41■□□□□ 0.38
BRCA1P38398 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 PLA2G12B-201ENST00000373032 1128 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 IFNA2-201ENST00000380206 1135 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
BRCA1P38398 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
BRCA1P38398 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 TMEM14B-215ENST00000481240 1032 ntTSL 2 BASIC17.41■□□□□ 0.38
BRCA1P38398 SRRM2-AS1-204ENST00000573802 818 ntTSL 2 BASIC17.41■□□□□ 0.38
BRCA1P38398 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
BRCA1P38398 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC17.41■□□□□ 0.38
BRCA1P38398 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17.41■□□□□ 0.38
BRCA1P38398 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
BRCA1P38398 FAM226B-201ENST00000602508 1490 ntBASIC17.4■□□□□ 0.38
BRCA1P38398 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BRCA1P38398 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BRCA1P38398 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.4■□□□□ 0.38
BRCA1P38398 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BRCA1P38398 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
BRCA1P38398 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC17.4■□□□□ 0.38
BRCA1P38398 AC103563.1-201ENST00000429316 123 ntBASIC17.4■□□□□ 0.38
BRCA1P38398 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
BRCA1P38398 AC092910.2-201ENST00000491262 348 ntBASIC17.4■□□□□ 0.38
BRCA1P38398 MIR2278-201ENST00000516344 96 ntBASIC17.4■□□□□ 0.38
BRCA1P38398 ACY3-202ENST00000529256 933 ntTSL 3 BASIC17.4■□□□□ 0.38
BRCA1P38398 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC17.4■□□□□ 0.38
BRCA1P38398 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.4■□□□□ 0.38
BRCA1P38398 CCDC32-201ENST00000358005 1704 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
BRCA1P38398 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
BRCA1P38398 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
BRCA1P38398 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
BRCA1P38398 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.4■□□□□ 0.38
BRCA1P38398 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
BRCA1P38398 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.4■□□□□ 0.38
BRCA1P38398 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
BRCA1P38398 HLF-202ENST00000430986 1385 ntTSL 2 BASIC17.4■□□□□ 0.38
BRCA1P38398 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
BRCA1P38398 AC020658.6-201ENST00000623564 1870 ntBASIC17.4■□□□□ 0.38
BRCA1P38398 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC17.39■□□□□ 0.38
BRCA1P38398 AC099567.1-201ENST00000414418 931 ntTSL 5 BASIC17.39■□□□□ 0.38
BRCA1P38398 HNRNPA1P21-201ENST00000424115 961 ntBASIC17.39■□□□□ 0.38
BRCA1P38398 MAGEA7P-201ENST00000436482 942 ntBASIC17.39■□□□□ 0.38
BRCA1P38398 AC025594.1-201ENST00000469533 543 ntBASIC17.39■□□□□ 0.38
BRCA1P38398 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC17.39■□□□□ 0.38
BRCA1P38398 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC17.39■□□□□ 0.38
BRCA1P38398 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
BRCA1P38398 AC091304.3-201ENST00000566500 716 ntBASIC17.39■□□□□ 0.38
BRCA1P38398 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC17.39■□□□□ 0.38
BRCA1P38398 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
BRCA1P38398 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.39■□□□□ 0.37
BRCA1P38398 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC17.39■□□□□ 0.37
BRCA1P38398 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 HTD2-205ENST00000477305 1531 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
BRCA1P38398 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 UBL7-206ENST00000565335 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 GGTLC4P-201ENST00000402176 664 ntBASIC17.39■□□□□ 0.37
BRCA1P38398 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC17.39■□□□□ 0.37
BRCA1P38398 DLEU2-205ENST00000443587 705 ntTSL 5 BASIC17.39■□□□□ 0.37
BRCA1P38398 LINC00887-204ENST00000456816 796 ntTSL 3 BASIC17.39■□□□□ 0.37
BRCA1P38398 SNRPD2P2-201ENST00000473818 333 ntBASIC17.39■□□□□ 0.37
BRCA1P38398 ALG1L15P-201ENST00000482834 794 ntBASIC17.39■□□□□ 0.37
BRCA1P38398 GOLGA2P8-201ENST00000505201 779 ntBASIC17.39■□□□□ 0.37
BRCA1P38398 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC17.39■□□□□ 0.37
BRCA1P38398 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 BATF-202ENST00000555504 361 ntTSL 2 BASIC17.39■□□□□ 0.37
BRCA1P38398 AC005777.1-201ENST00000588332 187 ntBASIC17.39■□□□□ 0.37
BRCA1P38398 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC17.39■□□□□ 0.37
BRCA1P38398 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC17.39■□□□□ 0.37
BRCA1P38398 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
BRCA1P38398 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms