Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 MORN2-201ENST00000340556 741 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 AC108724.1-201ENST00000481669 352 ntBASIC16.99■□□□□ 0.31
SCN4AP35499 EEF1GP8-201ENST00000506566 1154 ntBASIC16.99■□□□□ 0.31
SCN4AP35499 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC16.99■□□□□ 0.31
SCN4AP35499 AC245369.7-201ENST00000631386 350 ntBASIC16.99■□□□□ 0.31
SCN4AP35499 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC16.99■□□□□ 0.31
SCN4AP35499 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.99■□□□□ 0.31
SCN4AP35499 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.99■□□□□ 0.31
SCN4AP35499 AC020931.1-201ENST00000589622 1346 ntBASIC16.99■□□□□ 0.31
SCN4AP35499 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.99■□□□□ 0.31
SCN4AP35499 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC16.99■□□□□ 0.31
SCN4AP35499 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SCN4AP35499 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
SCN4AP35499 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 FCN2-202ENST00000350339 943 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
SCN4AP35499 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 HLA-DMA-202ENST00000395303 1007 ntBASIC16.98■□□□□ 0.31
SCN4AP35499 AC053503.3-201ENST00000448375 114 ntBASIC16.98■□□□□ 0.31
SCN4AP35499 BLOC1S5-205ENST00000543936 368 ntTSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC16.98■□□□□ 0.31
SCN4AP35499 AC104590.1-201ENST00000560813 648 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 RN7SL121P-201ENST00000584223 273 ntBASIC16.98■□□□□ 0.31
SCN4AP35499 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC16.98■□□□□ 0.31
SCN4AP35499 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC16.98■□□□□ 0.31
SCN4AP35499 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC16.98■□□□□ 0.31
SCN4AP35499 AC023024.2-201ENST00000623561 1993 ntBASIC16.98■□□□□ 0.31
SCN4AP35499 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.98■□□□□ 0.31
SCN4AP35499 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC16.98■□□□□ 0.31
SCN4AP35499 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.98■□□□□ 0.31
SCN4AP35499 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC16.98■□□□□ 0.31
SCN4AP35499 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 CCL25-202ENST00000315626 450 ntTSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC16.98■□□□□ 0.31
SCN4AP35499 PPM1N-203ENST00000396737 872 ntTSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 MPV17-207ENST00000403262 665 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 LINP1-201ENST00000417112 917 ntTSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 AL137244.1-201ENST00000422931 865 ntBASIC16.98■□□□□ 0.31
SCN4AP35499 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 AL353658.1-201ENST00000436263 789 ntTSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC16.98■□□□□ 0.31
SCN4AP35499 RHOQP2-201ENST00000449922 579 ntBASIC16.98■□□□□ 0.31
SCN4AP35499 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC16.98■□□□□ 0.31
SCN4AP35499 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
SCN4AP35499 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 AF274856.1-202ENST00000509345 871 ntTSL 4 BASIC16.98■□□□□ 0.31
SCN4AP35499 MIR2278-201ENST00000516344 96 ntBASIC16.98■□□□□ 0.31
SCN4AP35499 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC16.98■□□□□ 0.31
SCN4AP35499 AC008747.1-201ENST00000592220 442 ntTSL 3 BASIC16.98■□□□□ 0.31
SCN4AP35499 ZNF724-202ENST00000597037 780 ntTSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.98■□□□□ 0.31
SCN4AP35499 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SCN4AP35499 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.97■□□□□ 0.31
SCN4AP35499 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 HLF-202ENST00000430986 1385 ntTSL 2 BASIC16.97■□□□□ 0.31
SCN4AP35499 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC16.97■□□□□ 0.31
SCN4AP35499 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC16.97■□□□□ 0.31
SCN4AP35499 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 KRT8P18-201ENST00000413425 1445 ntBASIC16.97■□□□□ 0.31
SCN4AP35499 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC16.97■□□□□ 0.31
SCN4AP35499 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC16.97■□□□□ 0.31
SCN4AP35499 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.97■□□□□ 0.31
SCN4AP35499 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 LINC00303-203ENST00000427799 1028 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SCN4AP35499 RN7SL351P-201ENST00000469306 248 ntBASIC16.97■□□□□ 0.31
SCN4AP35499 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC16.97■□□□□ 0.31
SCN4AP35499 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC16.97■□□□□ 0.31
SCN4AP35499 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms