Protein–RNA interactions for Protein: P31275

HOXC12, Homeobox protein Hox-C12, humanhuman

Predictions only

Length 282 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC12P31275 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HOXC12P31275 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
HOXC12P31275 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC13.29□□□□□ -0.28
HOXC12P31275 SPTBN2-201ENST00000309996 7866 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXC12P31275 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
HOXC12P31275 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC13.28□□□□□ -0.28
HOXC12P31275 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.28□□□□□ -0.28
HOXC12P31275 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.28□□□□□ -0.28
HOXC12P31275 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC13.28□□□□□ -0.28
HOXC12P31275 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC13.28□□□□□ -0.28
HOXC12P31275 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC13.28□□□□□ -0.28
HOXC12P31275 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HOXC12P31275 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.28□□□□□ -0.28
HOXC12P31275 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC13.28□□□□□ -0.28
HOXC12P31275 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.28□□□□□ -0.28
HOXC12P31275 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC13.28□□□□□ -0.28
HOXC12P31275 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 AC104306.2-201ENST00000451877 341 ntBASIC13.28□□□□□ -0.28
HOXC12P31275 AKR7A2P1-201ENST00000460134 915 ntBASIC13.28□□□□□ -0.28
HOXC12P31275 RNA5SP486-201ENST00000515961 83 ntBASIC13.28□□□□□ -0.28
HOXC12P31275 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 AC079328.1-201ENST00000560358 952 ntBASIC13.28□□□□□ -0.28
HOXC12P31275 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC13.28□□□□□ -0.28
HOXC12P31275 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
HOXC12P31275 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC13.28□□□□□ -0.28
HOXC12P31275 AC132938.4-201ENST00000623835 848 ntBASIC13.28□□□□□ -0.28
HOXC12P31275 AC015967.2-201ENST00000624092 234 ntBASIC13.28□□□□□ -0.28
HOXC12P31275 AC006435.4-201ENST00000625037 234 ntBASIC13.28□□□□□ -0.28
HOXC12P31275 AL356737.1-201ENST00000634391 234 ntBASIC13.28□□□□□ -0.28
HOXC12P31275 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
HOXC12P31275 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HOXC12P31275 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 REXO1L5P-201ENST00000622260 2098 ntBASIC13.28□□□□□ -0.28
HOXC12P31275 AC138035.3-201ENST00000622706 2791 ntBASIC13.28□□□□□ -0.28
HOXC12P31275 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
HOXC12P31275 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 PFAS-201ENST00000314666 5371 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
HOXC12P31275 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC13.28□□□□□ -0.28
HOXC12P31275 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.27□□□□□ -0.28
HOXC12P31275 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
HOXC12P31275 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.27□□□□□ -0.28
HOXC12P31275 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXC12P31275 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXC12P31275 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC13.27□□□□□ -0.28
HOXC12P31275 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXC12P31275 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXC12P31275 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXC12P31275 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.27□□□□□ -0.28
HOXC12P31275 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXC12P31275 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXC12P31275 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HOXC12P31275 AC073957.3-201ENST00000609998 6758 ntBASIC13.27□□□□□ -0.28
HOXC12P31275 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXC12P31275 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXC12P31275 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXC12P31275 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXC12P31275 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.27□□□□□ -0.29
HOXC12P31275 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC13.27□□□□□ -0.29
HOXC12P31275 NEU3-202ENST00000526068 431 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXC12P31275 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.27□□□□□ -0.29
HOXC12P31275 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXC12P31275 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
HOXC12P31275 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC13.27□□□□□ -0.29
HOXC12P31275 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC13.27□□□□□ -0.29
HOXC12P31275 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXC12P31275 ENPP7P14-201ENST00000621765 1040 ntBASIC13.27□□□□□ -0.29
HOXC12P31275 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC13.27□□□□□ -0.29
HOXC12P31275 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXC12P31275 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXC12P31275 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXC12P31275 STRCP1-201ENST00000509801 5328 ntBASIC13.27□□□□□ -0.29
HOXC12P31275 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXC12P31275 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXC12P31275 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXC12P31275 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HOXC12P31275 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC13.27□□□□□ -0.29
HOXC12P31275 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXC12P31275 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HOXC12P31275 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
HOXC12P31275 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms