Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 CEP135-202ENST00000422247 2092 ntTSL 2 BASIC14.18□□□□□ -0.14
SDC1P18827 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.18□□□□□ -0.14
SDC1P18827 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC14.18□□□□□ -0.14
SDC1P18827 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC14.18□□□□□ -0.14
SDC1P18827 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
SDC1P18827 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC14.18□□□□□ -0.14
SDC1P18827 AC140912.1-201ENST00000577171 1054 ntBASIC14.18□□□□□ -0.14
SDC1P18827 STRADA-221ENST00000582137 1238 ntTSL 2 BASIC14.18□□□□□ -0.14
SDC1P18827 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
SDC1P18827 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.18□□□□□ -0.14
SDC1P18827 AC011840.2-201ENST00000563063 1520 ntBASIC14.18□□□□□ -0.14
SDC1P18827 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 TPM3-206ENST00000330188 2108 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC14.18□□□□□ -0.14
SDC1P18827 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 INE2-201ENST00000630399 1874 ntBASIC14.18□□□□□ -0.14
SDC1P18827 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
SDC1P18827 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 WARS-203ENST00000358655 2466 ntTSL 2 BASIC14.18□□□□□ -0.14
SDC1P18827 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
SDC1P18827 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
SDC1P18827 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 HARS2-201ENST00000230771 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
SDC1P18827 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SDC1P18827 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.17□□□□□ -0.14
SDC1P18827 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC14.17□□□□□ -0.14
SDC1P18827 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 AC015688.4-201ENST00000580780 1647 ntBASIC14.17□□□□□ -0.14
SDC1P18827 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SDC1P18827 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.17□□□□□ -0.14
SDC1P18827 AC236430.1-201ENST00000402231 743 ntBASIC14.17□□□□□ -0.14
SDC1P18827 BCRP1-201ENST00000444246 691 ntBASIC14.17□□□□□ -0.14
SDC1P18827 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
SDC1P18827 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC14.17□□□□□ -0.14
SDC1P18827 AC009486.1-201ENST00000569860 813 ntBASIC14.17□□□□□ -0.14
SDC1P18827 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.17□□□□□ -0.14
SDC1P18827 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC14.17□□□□□ -0.14
SDC1P18827 AC138696.2-201ENST00000607376 223 ntBASIC14.17□□□□□ -0.14
SDC1P18827 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
SDC1P18827 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
SDC1P18827 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
SDC1P18827 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SDC1P18827 SOGA3-201ENST00000465909 3756 ntTSL 5 BASIC14.17□□□□□ -0.14
SDC1P18827 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SDC1P18827 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 RGS3-208ENST00000394646 2716 ntTSL 2 BASIC14.17□□□□□ -0.14
SDC1P18827 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SDC1P18827 GRID2IP-203ENST00000457091 3636 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SDC1P18827 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
SDC1P18827 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC14.17□□□□□ -0.14
SDC1P18827 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
SDC1P18827 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
SDC1P18827 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
SDC1P18827 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 RBBP4-204ENST00000414241 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
SDC1P18827 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 CLUHP2-201ENST00000426660 1303 ntBASIC14.16□□□□□ -0.14
SDC1P18827 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
SDC1P18827 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 718.6 ms