Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.22■□□□□ 0.67
COL3A1P02461 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC19.22■□□□□ 0.67
COL3A1P02461 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL3A1P02461 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC19.22■□□□□ 0.67
COL3A1P02461 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC19.22■□□□□ 0.67
COL3A1P02461 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 AC093520.1-201ENST00000567545 1767 ntTSL 5 BASIC19.22■□□□□ 0.67
COL3A1P02461 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC19.22■□□□□ 0.67
COL3A1P02461 MBP-201ENST00000354542 575 ntTSL 2 BASIC19.22■□□□□ 0.67
COL3A1P02461 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC19.22■□□□□ 0.67
COL3A1P02461 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC19.22■□□□□ 0.67
COL3A1P02461 RN7SL769P-201ENST00000469386 295 ntBASIC19.22■□□□□ 0.67
COL3A1P02461 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC19.22■□□□□ 0.67
COL3A1P02461 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
COL3A1P02461 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC19.22■□□□□ 0.67
COL3A1P02461 AC026803.1-201ENST00000569130 274 ntBASIC19.22■□□□□ 0.67
COL3A1P02461 CENPX-208ENST00000584347 799 ntTSL 2 BASIC19.22■□□□□ 0.67
COL3A1P02461 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC19.22■□□□□ 0.67
COL3A1P02461 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 AC021016.3-201ENST00000608367 477 ntBASIC19.22■□□□□ 0.67
COL3A1P02461 YRDCP1-201ENST00000621419 643 ntBASIC19.22■□□□□ 0.67
COL3A1P02461 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL3A1P02461 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC19.21■□□□□ 0.67
COL3A1P02461 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC19.21■□□□□ 0.67
COL3A1P02461 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC19.21■□□□□ 0.67
COL3A1P02461 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC19.21■□□□□ 0.67
COL3A1P02461 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC19.21■□□□□ 0.67
COL3A1P02461 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
COL3A1P02461 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
COL3A1P02461 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC19.21■□□□□ 0.67
COL3A1P02461 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 UFM1-202ENST00000379649 846 ntTSL 4 BASIC19.21■□□□□ 0.67
COL3A1P02461 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC19.21■□□□□ 0.67
COL3A1P02461 ELK2AP-201ENST00000392510 1007 ntBASIC19.21■□□□□ 0.67
COL3A1P02461 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
COL3A1P02461 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 RN7SL258P-201ENST00000478664 300 ntBASIC19.21■□□□□ 0.67
COL3A1P02461 RHEB-207ENST00000496004 744 ntTSL 2 BASIC19.21■□□□□ 0.67
COL3A1P02461 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 MIR3907-201ENST00000579424 151 ntBASIC19.21■□□□□ 0.67
COL3A1P02461 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC19.21■□□□□ 0.67
COL3A1P02461 AL591471.1-201ENST00000621855 229 ntBASIC19.21■□□□□ 0.67
COL3A1P02461 AC006453.1-201ENST00000636037 1257 ntBASIC19.21■□□□□ 0.67
COL3A1P02461 GATB-201ENST00000263985 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
COL3A1P02461 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 SC5D-201ENST00000264027 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL3A1P02461 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
COL3A1P02461 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC19.21■□□□□ 0.67
COL3A1P02461 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC19.21■□□□□ 0.67
COL3A1P02461 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
COL3A1P02461 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
COL3A1P02461 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 EIF4E2-201ENST00000258416 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
COL3A1P02461 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
COL3A1P02461 PLA2G15-209ENST00000566188 1203 ntTSL 2 BASIC19.2■□□□□ 0.66
COL3A1P02461 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 ELP5-212ENST00000574255 671 ntTSL 2 BASIC19.2■□□□□ 0.66
COL3A1P02461 NEAT1-203ENST00000601801 487 ntTSL 4 BASIC19.2■□□□□ 0.66
COL3A1P02461 AC012044.1-201ENST00000603431 297 ntBASIC19.2■□□□□ 0.66
COL3A1P02461 AC007718.1-201ENST00000621078 280 ntBASIC19.2■□□□□ 0.66
COL3A1P02461 ANXA9-201ENST00000368947 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC19.2■□□□□ 0.66
COL3A1P02461 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL3A1P02461 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms