Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
RAPGEF3O95398 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
RAPGEF3O95398 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
RAPGEF3O95398 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC21.67■■□□□ 1.06
RAPGEF3O95398 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC21.67■■□□□ 1.06
RAPGEF3O95398 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC21.67■■□□□ 1.06
RAPGEF3O95398 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RAPGEF3O95398 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
RAPGEF3O95398 LUC7L2-208ENST00000541170 1525 ntTSL 2 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAPGEF3O95398 ZNF576-202ENST00000391965 1468 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAPGEF3O95398 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAPGEF3O95398 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAPGEF3O95398 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 PSAT1P2-201ENST00000426107 972 ntBASIC21.66■■□□□ 1.06
RAPGEF3O95398 KRT8P30-201ENST00000432100 650 ntBASIC21.66■■□□□ 1.06
RAPGEF3O95398 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 RN7SL788P-201ENST00000460504 316 ntBASIC21.66■■□□□ 1.06
RAPGEF3O95398 HNRNPA1P5-201ENST00000558213 966 ntBASIC21.66■■□□□ 1.06
RAPGEF3O95398 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 AC092073.1-202ENST00000606020 653 ntTSL 3 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 AC139713.2-207ENST00000641556 1292 ntBASIC21.66■■□□□ 1.06
RAPGEF3O95398 DKFZP434H168-201ENST00000567381 1905 ntBASIC21.66■■□□□ 1.06
RAPGEF3O95398 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAPGEF3O95398 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAPGEF3O95398 RARS2-201ENST00000369536 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAPGEF3O95398 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAPGEF3O95398 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC21.66■■□□□ 1.06
RAPGEF3O95398 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
RAPGEF3O95398 ODCP-201ENST00000459650 1639 ntBASIC21.66■■□□□ 1.06
RAPGEF3O95398 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
RAPGEF3O95398 KLK4-201ENST00000324041 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 AL365181.1-201ENST00000564032 1828 ntBASIC21.65■■□□□ 1.06
RAPGEF3O95398 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
RAPGEF3O95398 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 CCL25-202ENST00000315626 450 ntTSL 2 BASIC21.65■■□□□ 1.06
RAPGEF3O95398 HNRNPA1P2-207ENST00000432375 960 ntBASIC21.65■■□□□ 1.06
RAPGEF3O95398 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC21.65■■□□□ 1.06
RAPGEF3O95398 HOXC-AS3-203ENST00000514702 368 ntTSL 3 BASIC21.65■■□□□ 1.06
RAPGEF3O95398 AC087203.1-201ENST00000532111 1181 ntBASIC21.65■■□□□ 1.06
RAPGEF3O95398 AC145285.5-201ENST00000562217 361 ntBASIC21.65■■□□□ 1.06
RAPGEF3O95398 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 KHSRPP1-201ENST00000427983 1768 ntBASIC21.65■■□□□ 1.06
RAPGEF3O95398 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC21.65■■□□□ 1.06
RAPGEF3O95398 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC21.65■■□□□ 1.06
RAPGEF3O95398 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC21.65■■□□□ 1.06
RAPGEF3O95398 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
RAPGEF3O95398 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC21.65■■□□□ 1.06
RAPGEF3O95398 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 AADAT-206ENST00000509167 2113 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
RAPGEF3O95398 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
RAPGEF3O95398 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
RAPGEF3O95398 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
RAPGEF3O95398 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
RAPGEF3O95398 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
RAPGEF3O95398 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC21.64■■□□□ 1.06
RAPGEF3O95398 AC011270.2-201ENST00000624293 2550 ntBASIC21.64■■□□□ 1.06
RAPGEF3O95398 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC21.64■■□□□ 1.06
RAPGEF3O95398 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC21.64■■□□□ 1.06
RAPGEF3O95398 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC21.64■■□□□ 1.05
RAPGEF3O95398 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC21.64■■□□□ 1.05
RAPGEF3O95398 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
RAPGEF3O95398 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
RAPGEF3O95398 SOD2-205ENST00000444946 917 ntTSL 2 BASIC21.64■■□□□ 1.05
RAPGEF3O95398 RHOQP2-201ENST00000449922 579 ntBASIC21.64■■□□□ 1.05
RAPGEF3O95398 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC21.64■■□□□ 1.05
RAPGEF3O95398 RN7SL128P-201ENST00000467883 305 ntBASIC21.64■■□□□ 1.05
RAPGEF3O95398 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC21.64■■□□□ 1.05
RAPGEF3O95398 AC015795.2-201ENST00000512720 575 ntTSL 3 BASIC21.64■■□□□ 1.05
RAPGEF3O95398 CTBP2P6-201ENST00000526402 1229 ntBASIC21.64■■□□□ 1.05
RAPGEF3O95398 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
RAPGEF3O95398 AP005264.5-201ENST00000590066 467 ntBASIC21.64■■□□□ 1.05
RAPGEF3O95398 AC080013.5-201ENST00000607044 679 ntBASIC21.64■■□□□ 1.05
RAPGEF3O95398 AL359091.4-201ENST00000610052 409 ntBASIC21.64■■□□□ 1.05
RAPGEF3O95398 PHF23-213ENST00000613632 850 ntTSL 5 BASIC21.64■■□□□ 1.05
RAPGEF3O95398 AL135936.1-201ENST00000617956 998 ntTSL 5 BASIC21.64■■□□□ 1.05
RAPGEF3O95398 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms