Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 LAP3P2-201ENST00000454686 1454 ntBASIC20.29■□□□□ 0.84
NPHP4O75161 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
NPHP4O75161 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
NPHP4O75161 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC20.29■□□□□ 0.84
NPHP4O75161 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 HIST1H2BK-201ENST00000356950 381 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
NPHP4O75161 FAM21EP-201ENST00000417804 985 ntBASIC20.28■□□□□ 0.84
NPHP4O75161 CU639417.1-201ENST00000464664 460 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
NPHP4O75161 POLR3G-207ENST00000514483 682 ntTSL 3 BASIC20.28■□□□□ 0.84
NPHP4O75161 AC145422.1-201ENST00000541574 544 ntTSL 3 BASIC20.28■□□□□ 0.84
NPHP4O75161 AC078814.4-201ENST00000546650 327 ntBASIC20.28■□□□□ 0.84
NPHP4O75161 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC20.28■□□□□ 0.84
NPHP4O75161 ADGRE3-204ENST00000595472 486 ntTSL 3 BASIC20.28■□□□□ 0.84
NPHP4O75161 H2BFS-201ENST00000599962 460 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
NPHP4O75161 PRMT1P1-201ENST00000604252 1009 ntBASIC20.28■□□□□ 0.84
NPHP4O75161 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC20.28■□□□□ 0.84
NPHP4O75161 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 AC084018.2-201ENST00000613093 2607 ntBASIC20.28■□□□□ 0.84
NPHP4O75161 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC20.28■□□□□ 0.84
NPHP4O75161 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC20.28■□□□□ 0.84
NPHP4O75161 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC20.28■□□□□ 0.84
NPHP4O75161 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC20.28■□□□□ 0.84
NPHP4O75161 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 ATP5A1-215ENST00000590665 1793 ntTSL 2 BASIC20.28■□□□□ 0.84
NPHP4O75161 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
NPHP4O75161 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
NPHP4O75161 AL121949.3-201ENST00000406684 385 ntBASIC20.27■□□□□ 0.84
NPHP4O75161 BX679664.3-201ENST00000414070 555 ntBASIC20.27■□□□□ 0.84
NPHP4O75161 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC20.27■□□□□ 0.84
NPHP4O75161 AC025594.1-201ENST00000469533 543 ntBASIC20.27■□□□□ 0.84
NPHP4O75161 AC113935.1-201ENST00000471722 555 ntBASIC20.27■□□□□ 0.84
NPHP4O75161 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC20.27■□□□□ 0.84
NPHP4O75161 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC20.27■□□□□ 0.84
NPHP4O75161 TUBB6-214ENST00000592683 481 ntTSL 4 BASIC20.27■□□□□ 0.84
NPHP4O75161 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC20.27■□□□□ 0.84
NPHP4O75161 NEK4P3-201ENST00000604859 544 ntBASIC20.27■□□□□ 0.84
NPHP4O75161 HPX-213ENST00000615166 826 ntTSL 5 BASIC20.27■□□□□ 0.84
NPHP4O75161 MIR6125-201ENST00000618986 96 ntBASIC20.27■□□□□ 0.84
NPHP4O75161 AC073869.4-201ENST00000620841 800 ntBASIC20.27■□□□□ 0.84
NPHP4O75161 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
NPHP4O75161 AP003900.1-201ENST00000622592 859 ntTSL 3 BASIC20.27■□□□□ 0.84
NPHP4O75161 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP4O75161 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC20.27■□□□□ 0.84
NPHP4O75161 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
NPHP4O75161 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP4O75161 DKFZP434H168-201ENST00000567381 1905 ntBASIC20.27■□□□□ 0.84
NPHP4O75161 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP4O75161 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP4O75161 CNBP-205ENST00000500450 1516 ntTSL 2 BASIC20.27■□□□□ 0.84
NPHP4O75161 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC20.27■□□□□ 0.84
NPHP4O75161 L2HGDH-201ENST00000261699 1377 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP4O75161 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
NPHP4O75161 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC20.27■□□□□ 0.84
NPHP4O75161 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP4O75161 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
NPHP4O75161 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
NPHP4O75161 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC20.27■□□□□ 0.84
NPHP4O75161 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
NPHP4O75161 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.27■□□□□ 0.83
NPHP4O75161 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
NPHP4O75161 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NPHP4O75161 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
NPHP4O75161 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
NPHP4O75161 AHCYP3-201ENST00000420053 1279 ntBASIC20.27■□□□□ 0.83
NPHP4O75161 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
NPHP4O75161 AC005740.1-201ENST00000515639 522 ntBASIC20.27■□□□□ 0.83
NPHP4O75161 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC20.27■□□□□ 0.83
NPHP4O75161 MIR4265-201ENST00000582152 99 ntBASIC20.27■□□□□ 0.83
NPHP4O75161 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
NPHP4O75161 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC20.26■□□□□ 0.83
NPHP4O75161 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
NPHP4O75161 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC20.26■□□□□ 0.83
NPHP4O75161 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 ALG3-207ENST00000455059 1697 ntTSL 5 BASIC20.26■□□□□ 0.83
NPHP4O75161 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP4O75161 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC20.26■□□□□ 0.83
NPHP4O75161 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPHP4O75161 PDXDC2P-206ENST00000534700 1315 ntBASIC20.26■□□□□ 0.83
NPHP4O75161 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms