Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC15.53■□□□□ 0.08
SOX1O00570 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
SOX1O00570 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 AIFM1-203ENST00000346424 1200 ntTSL 2 BASIC15.53■□□□□ 0.08
SOX1O00570 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
SOX1O00570 HLA-DMA-202ENST00000395303 1007 ntBASIC15.53■□□□□ 0.08
SOX1O00570 SNRPCP15-201ENST00000424055 192 ntBASIC15.53■□□□□ 0.08
SOX1O00570 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC15.53■□□□□ 0.08
SOX1O00570 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 PFN2-212ENST00000490975 858 ntTSL 4 BASIC15.53■□□□□ 0.08
SOX1O00570 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 BLOC1S1-202ENST00000548556 525 ntTSL 2 BASIC15.53■□□□□ 0.08
SOX1O00570 LOXL1-AS1-207ENST00000565689 735 ntTSL 3 BASIC15.53■□□□□ 0.08
SOX1O00570 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC15.53■□□□□ 0.08
SOX1O00570 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
SOX1O00570 AC021321.1-201ENST00000607397 1113 ntBASIC15.53■□□□□ 0.08
SOX1O00570 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
SOX1O00570 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC15.53■□□□□ 0.08
SOX1O00570 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
SOX1O00570 AD000864.1-201ENST00000624076 2295 ntBASIC15.53■□□□□ 0.08
SOX1O00570 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.53■□□□□ 0.08
SOX1O00570 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
SOX1O00570 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.53■□□□□ 0.08
SOX1O00570 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
SOX1O00570 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
SOX1O00570 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC15.53■□□□□ 0.08
SOX1O00570 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC15.53■□□□□ 0.08
SOX1O00570 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
SOX1O00570 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.52■□□□□ 0.08
SOX1O00570 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SOX1O00570 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SOX1O00570 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SOX1O00570 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SOX1O00570 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC15.52■□□□□ 0.08
SOX1O00570 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC15.52■□□□□ 0.08
SOX1O00570 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.52■□□□□ 0.08
SOX1O00570 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.52■□□□□ 0.08
SOX1O00570 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SOX1O00570 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
SOX1O00570 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
SOX1O00570 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
SOX1O00570 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC15.52■□□□□ 0.08
SOX1O00570 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC15.52■□□□□ 0.08
SOX1O00570 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
SOX1O00570 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC15.52■□□□□ 0.08
SOX1O00570 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
SOX1O00570 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
SOX1O00570 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.52■□□□□ 0.08
SOX1O00570 OR8T1P-201ENST00000421347 918 ntBASIC15.52■□□□□ 0.08
SOX1O00570 HNRNPA1P25-201ENST00000422644 937 ntBASIC15.52■□□□□ 0.08
SOX1O00570 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC15.52■□□□□ 0.08
SOX1O00570 AC013436.1-201ENST00000425077 422 ntTSL 3 BASIC15.52■□□□□ 0.08
SOX1O00570 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC15.52■□□□□ 0.08
SOX1O00570 NRADDP-201ENST00000437305 691 ntBASIC15.52■□□□□ 0.08
SOX1O00570 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.52■□□□□ 0.08
SOX1O00570 CD300LF-206ENST00000464910 996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
SOX1O00570 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC15.52■□□□□ 0.08
SOX1O00570 ISL1-203ENST00000511384 981 ntTSL 5 BASIC15.52■□□□□ 0.08
SOX1O00570 MBP-230ENST00000528160 584 ntTSL 5 BASIC15.52■□□□□ 0.08
SOX1O00570 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
SOX1O00570 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC15.52■□□□□ 0.08
SOX1O00570 NT5C-204ENST00000578337 582 ntTSL 2 BASIC15.52■□□□□ 0.08
SOX1O00570 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC15.52■□□□□ 0.08
SOX1O00570 CHD2-218ENST00000629346 1249 ntTSL 5 BASIC15.52■□□□□ 0.08
SOX1O00570 NCS1-203ENST00000630865 1092 ntTSL 3 BASIC15.52■□□□□ 0.08
SOX1O00570 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
SOX1O00570 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SOX1O00570 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
SOX1O00570 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SOX1O00570 AC013726.1-201ENST00000563747 2285 ntBASIC15.52■□□□□ 0.07
SOX1O00570 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SOX1O00570 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.52■□□□□ 0.07
SOX1O00570 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
SOX1O00570 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SOX1O00570 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SOX1O00570 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
SOX1O00570 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SOX1O00570 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
SOX1O00570 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
SOX1O00570 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
SOX1O00570 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
SOX1O00570 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC15.51■□□□□ 0.07
SOX1O00570 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX1O00570 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
SOX1O00570 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX1O00570 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
SOX1O00570 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.51■□□□□ 0.07
SOX1O00570 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
SOX1O00570 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
SOX1O00570 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC15.51■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms