Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 UHMK1-203ENST00000538489 8446 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 RBM6-211ENST00000443081 4010 ntTSL 5 BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 AC004241.5-201ENST00000623870 2448 ntBASIC10.95□□□□□ -0.66
SMKR1H3BMG3 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 DNAJC13-201ENST00000260818 7730 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 ACP7-201ENST00000331256 2966 ntAPPRIS P1 TSL 2 BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC10.95□□□□□ -0.66
SMKR1H3BMG3 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 STRCP1-201ENST00000509801 5328 ntBASIC10.94□□□□□ -0.66
SMKR1H3BMG3 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 MOG-221ENST00000376917 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 AC015818.8-201ENST00000587907 1519 ntBASIC10.94□□□□□ -0.66
SMKR1H3BMG3 MPP2-214ENST00000523501 2121 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 DCAF8L2-203ENST00000545306 2013 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 DEK-201ENST00000244776 1441 ntTSL 2 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 ZNF778-202ENST00000433976 3608 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 SLC5A5-201ENST00000222248 3576 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 B3GAT1-202ENST00000392580 3522 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 MIR193BHG-211ENST00000641433 5365 ntBASIC10.94□□□□□ -0.66
SMKR1H3BMG3 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 GPR35-205ENST00000438013 3821 ntAPPRIS P3 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 IGHV3-62-201ENST00000520057 340 ntBASIC10.94□□□□□ -0.66
SMKR1H3BMG3 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 TBCB-211ENST00000589996 724 ntTSL 3 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 AL445228.2-201ENST00000605589 952 ntBASIC10.94□□□□□ -0.66
SMKR1H3BMG3 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 TBC1D9B-208ENST00000519746 2755 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 NLRX1-201ENST00000292199 3744 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 TBKBP1-201ENST00000361722 4121 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 EML1-203ENST00000334192 4064 ntTSL 5 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 HAL-202ENST00000538703 2637 ntTSL 2 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 DGCR8-201ENST00000351989 4514 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 UXT-AS1-201ENST00000590504 1525 ntBASIC10.94□□□□□ -0.66
SMKR1H3BMG3 C6orf62-202ENST00000378119 4134 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 USP9X-202ENST00000378308 8371 ntAPPRIS P1 TSL 5 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 ADAMTSL2-201ENST00000354484 4068 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 ANKRD20A19P-202ENST00000442969 2796 ntTSL 2 BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC10.94□□□□□ -0.66
SMKR1H3BMG3 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC10.93□□□□□ -0.66
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms