Protein–RNA interactions for Protein: X5D2U9

HLA-DRB4, HLA class II histocompatibility antigen, DR beta 4 chain, humanhuman

Predictions only

Length 266 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DRB4X5D2U9 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 AP001582.1-201ENST00000525856 295 ntBASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 TP53TG3HP-202ENST00000569755 579 ntBASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 COX11-202ENST00000571584 1108 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 IFT20-206ENST00000578122 834 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 IFT20-208ENST00000578985 831 ntTSL 3 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 EVC2-201ENST00000310917 4828 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 SLC9A7P1-202ENST00000556476 2239 ntBASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 APP-205ENST00000358918 2366 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 PTPN9-201ENST00000306726 3862 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DRB4X5D2U9 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 ABR-228ENST00000574437 3196 ntTSL 5 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 CSPG4P12-202ENST00000559989 7790 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 RDX-218ENST00000544551 4117 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 CCNJ-201ENST00000265992 4115 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 CRB3P1-201ENST00000449338 276 ntBASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 HNRNPA1P13-201ENST00000510646 963 ntBASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 SPDYE22P-201ENST00000582158 798 ntBASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 PRSS30P-206ENST00000641773 873 ntBASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 AGER-206ENST00000375070 1463 ntTSL 5 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DRB4X5D2U9 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC11.29□□□□□ -0.6
HLA-DRB4X5D2U9 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC11.29□□□□□ -0.6
HLA-DRB4X5D2U9 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DRB4X5D2U9 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
HLA-DRB4X5D2U9 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
HLA-DRB4X5D2U9 BX640514.1-201ENST00000583223 1918 ntBASIC11.29□□□□□ -0.6
HLA-DRB4X5D2U9 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC11.29□□□□□ -0.6
HLA-DRB4X5D2U9 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC11.29□□□□□ -0.6
HLA-DRB4X5D2U9 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC11.29□□□□□ -0.6
HLA-DRB4X5D2U9 USP31-203ENST00000567975 2142 ntTSL 2 BASIC11.29□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms