Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 AL512343.1-201ENST00000605837 169 ntBASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 AC017083.2-201ENST00000608069 979 ntBASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 LARP4-220ENST00000615080 856 ntTSL 5 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 PCDHGB1-202ENST00000611598 2592 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.12□□□□□ -0.15
ATG4BQ9Y4P1 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 AC007191.1-201ENST00000623179 2995 ntBASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 AL009178.2-201ENST00000597278 2719 ntBASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 UBE2D4-201ENST00000222402 3974 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 P2RX5-207ENST00000551178 1863 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 AC106820.3-201ENST00000561653 397 ntBASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 AL359881.2-201ENST00000602973 570 ntBASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 AL008721.1-201ENST00000609964 604 ntBASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 AC138951.2-201ENST00000623455 1161 ntBASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 CCDC47-201ENST00000225726 3466 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
ATG4BQ9Y4P1 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 PDIA3P1-201ENST00000471856 1510 ntBASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 AC009093.2-202ENST00000620513 2079 ntBASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 AP000593.2-201ENST00000542775 1433 ntBASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 RET-202ENST00000355710 5659 ntAPPRIS P3 TSL 5 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 BOLA2P3-201ENST00000404566 256 ntBASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 USB1-202ENST00000423271 1217 ntTSL 2 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
ATG4BQ9Y4P1 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms