Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RN7SL147P-201ENST00000487345 298 ntBASIC14.3□□□□□ -0.12
VPS13AQ96RL7 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 AC005746.3-201ENST00000614751 393 ntBASIC14.3□□□□□ -0.12
VPS13AQ96RL7 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
VPS13AQ96RL7 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 IFNLR1-204ENST00000374419 953 ntTSL 5 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 AC068057.1-201ENST00000453322 709 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 INO80E-209ENST00000567254 625 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 AC011489.1-201ENST00000586744 690 ntTSL 3 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 AL118522.1-201ENST00000611368 560 ntBASIC14.29□□□□□ -0.12
VPS13AQ96RL7 AL512324.3-201ENST00000619383 882 ntBASIC14.29□□□□□ -0.12
VPS13AQ96RL7 AC020922.4-201ENST00000621389 339 ntBASIC14.29□□□□□ -0.12
VPS13AQ96RL7 SNRPA1-216ENST00000626000 539 ntTSL 5 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 GPSM3-209ENST00000487761 1460 ntTSL 5 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 CNMD-203ENST00000448904 1444 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 SNORA57-201ENST00000383870 149 ntBASIC14.29□□□□□ -0.12
VPS13AQ96RL7 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 RN7SL564P-201ENST00000496309 250 ntBASIC14.29□□□□□ -0.12
VPS13AQ96RL7 AC131206.1-201ENST00000538078 1211 ntBASIC14.29□□□□□ -0.12
VPS13AQ96RL7 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 AC010127.1-202ENST00000597623 713 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
VPS13AQ96RL7 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 GPX3-202ENST00000517973 612 ntTSL 3 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 APOC1-209ENST00000592885 562 ntTSL 3 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 NUB1-212ENST00000568733 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 COL4A2-AS2-201ENST00000458403 1522 ntTSL 2 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 AC112693.3-201ENST00000624819 1983 ntBASIC14.28□□□□□ -0.12
VPS13AQ96RL7 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 AC093609.1-201ENST00000434020 952 ntTSL 2 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 AC103923.1-201ENST00000453229 1228 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 CICP12-201ENST00000455801 843 ntBASIC14.28□□□□□ -0.12
VPS13AQ96RL7 ZFP1-207ENST00000567481 493 ntTSL 4 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 GNG4-202ENST00000366598 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 SVOPL-202ENST00000419765 1523 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 FKBP4P8-201ENST00000610931 1369 ntBASIC14.28□□□□□ -0.12
VPS13AQ96RL7 IFNWP2-201ENST00000431203 580 ntBASIC14.28□□□□□ -0.12
VPS13AQ96RL7 FOXP4-AS1-205ENST00000454812 575 ntTSL 2 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 RPS23-207ENST00000511844 530 ntTSL 2 BASIC14.28□□□□□ -0.12
VPS13AQ96RL7 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms