Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLHC1Q8NHS4 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 NPFFR1-201ENST00000277942 8921 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 C1QBPP1-201ENST00000400117 770 ntBASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 MFNG-202ENST00000416983 2034 ntTSL 2 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 FBXO5-202ENST00000367241 2221 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CLHC1Q8NHS4 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 KIF17-203ENST00000400463 3731 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 AL139094.1-201ENST00000405549 1188 ntBASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 TPT1P11-201ENST00000458482 498 ntBASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.36□□□□□ -0.11
CLHC1Q8NHS4 AC026434.2-201ENST00000506094 1078 ntBASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms