Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC13.82□□□□□ -0.2
RNF4P78317 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.82□□□□□ -0.2
RNF4P78317 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC13.82□□□□□ -0.2
RNF4P78317 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC13.82□□□□□ -0.2
RNF4P78317 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC13.82□□□□□ -0.2
RNF4P78317 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RNF4P78317 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNF4P78317 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC13.82□□□□□ -0.2
RNF4P78317 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.81□□□□□ -0.2
RNF4P78317 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.81□□□□□ -0.2
RNF4P78317 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC13.81□□□□□ -0.2
RNF4P78317 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC13.81□□□□□ -0.2
RNF4P78317 AC018442.1-201ENST00000421439 2061 ntBASIC13.81□□□□□ -0.2
RNF4P78317 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.81□□□□□ -0.2
RNF4P78317 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC13.81□□□□□ -0.2
RNF4P78317 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC13.81□□□□□ -0.2
RNF4P78317 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 AC015818.8-201ENST00000587907 1519 ntBASIC13.81□□□□□ -0.2
RNF4P78317 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RNF4P78317 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
RNF4P78317 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 BRWD1P1-201ENST00000401091 371 ntBASIC13.81□□□□□ -0.2
RNF4P78317 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RNF4P78317 AC079178.1-201ENST00000420915 656 ntBASIC13.81□□□□□ -0.2
RNF4P78317 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC13.81□□□□□ -0.2
RNF4P78317 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC13.81□□□□□ -0.2
RNF4P78317 AC244157.2-201ENST00000616239 1006 ntBASIC13.81□□□□□ -0.2
RNF4P78317 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC13.81□□□□□ -0.2
RNF4P78317 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
RNF4P78317 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RNF4P78317 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC13.81□□□□□ -0.2
RNF4P78317 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 CICP4-201ENST00000447359 2812 ntBASIC13.81□□□□□ -0.2
RNF4P78317 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.81□□□□□ -0.2
RNF4P78317 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNF4P78317 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC13.8□□□□□ -0.2
RNF4P78317 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
RNF4P78317 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
RNF4P78317 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RNF4P78317 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
RNF4P78317 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC13.8□□□□□ -0.2
RNF4P78317 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
RNF4P78317 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.8□□□□□ -0.2
RNF4P78317 TISP43-201ENST00000409793 538 ntTSL 4 BASIC13.8□□□□□ -0.2
RNF4P78317 MIR1908-201ENST00000410394 80 ntBASIC13.8□□□□□ -0.2
RNF4P78317 BTBD6P1-201ENST00000412176 1267 ntBASIC13.8□□□□□ -0.2
RNF4P78317 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RNF4P78317 MTX1P1-201ENST00000440904 838 ntBASIC13.8□□□□□ -0.2
RNF4P78317 HIST2H2BB-201ENST00000449108 381 ntBASIC13.8□□□□□ -0.2
RNF4P78317 FAM86HP-204ENST00000513466 959 ntBASIC13.8□□□□□ -0.2
RNF4P78317 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC13.8□□□□□ -0.2
RNF4P78317 AC131206.1-201ENST00000538078 1211 ntBASIC13.8□□□□□ -0.2
RNF4P78317 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
RNF4P78317 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC13.8□□□□□ -0.2
RNF4P78317 VPS18-202ENST00000558474 873 ntTSL 3 BASIC13.8□□□□□ -0.2
RNF4P78317 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.8□□□□□ -0.2
RNF4P78317 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.8□□□□□ -0.2
RNF4P78317 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.8□□□□□ -0.2
RNF4P78317 AL358472.3-201ENST00000608147 415 ntBASIC13.8□□□□□ -0.2
RNF4P78317 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNF4P78317 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms