Protein–RNA interactions for Protein: P51784

USP11, Ubiquitin carboxyl-terminal hydrolase 11, humanhuman

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP11P51784 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16.77■□□□□ 0.28
USP11P51784 AL162426.1-201ENST00000624141 743 ntBASIC16.77■□□□□ 0.28
USP11P51784 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.77■□□□□ 0.28
USP11P51784 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP11P51784 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.77■□□□□ 0.27
USP11P51784 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
USP11P51784 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
USP11P51784 AGGF1P1-201ENST00000509500 2073 ntBASIC16.77■□□□□ 0.27
USP11P51784 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
USP11P51784 E2F3P2-201ENST00000447755 1422 ntBASIC16.77■□□□□ 0.27
USP11P51784 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
USP11P51784 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC16.77■□□□□ 0.27
USP11P51784 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
USP11P51784 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.27
USP11P51784 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC16.77■□□□□ 0.27
USP11P51784 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
USP11P51784 ZIM2-AS1-201ENST00000595954 2129 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 AC113367.3-201ENST00000508316 1912 ntBASIC16.76■□□□□ 0.27
USP11P51784 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
USP11P51784 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
USP11P51784 LINC00327-203ENST00000576696 1308 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC16.76■□□□□ 0.27
USP11P51784 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
USP11P51784 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
USP11P51784 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
USP11P51784 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 PTPA-215ENST00000432124 567 ntTSL 4 BASIC16.76■□□□□ 0.27
USP11P51784 POM121L10P-201ENST00000436994 1285 ntBASIC16.76■□□□□ 0.27
USP11P51784 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.76■□□□□ 0.27
USP11P51784 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.76■□□□□ 0.27
USP11P51784 HNRNPA1P36-201ENST00000521313 955 ntBASIC16.76■□□□□ 0.27
USP11P51784 AC104982.3-201ENST00000581995 514 ntBASIC16.76■□□□□ 0.27
USP11P51784 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
USP11P51784 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
USP11P51784 KHSRPP1-201ENST00000427983 1768 ntBASIC16.76■□□□□ 0.27
USP11P51784 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 SLC35E2-202ENST00000355439 2078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC16.76■□□□□ 0.27
USP11P51784 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
USP11P51784 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC16.75■□□□□ 0.27
USP11P51784 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 ZNF79-202ENST00000543471 2194 ntTSL 2 BASIC16.75■□□□□ 0.27
USP11P51784 ZNF79-203ENST00000612342 2192 ntTSL 2 BASIC16.75■□□□□ 0.27
USP11P51784 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC16.75■□□□□ 0.27
USP11P51784 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.75■□□□□ 0.27
USP11P51784 AC015688.4-201ENST00000580780 1647 ntBASIC16.75■□□□□ 0.27
USP11P51784 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
USP11P51784 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
USP11P51784 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
USP11P51784 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC16.75■□□□□ 0.27
USP11P51784 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC16.75■□□□□ 0.27
USP11P51784 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC16.75■□□□□ 0.27
USP11P51784 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.75■□□□□ 0.27
USP11P51784 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC16.75■□□□□ 0.27
USP11P51784 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC16.75■□□□□ 0.27
USP11P51784 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC16.75■□□□□ 0.27
USP11P51784 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC16.75■□□□□ 0.27
USP11P51784 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 MPI-203ENST00000535694 1523 ntTSL 2 BASIC16.75■□□□□ 0.27
USP11P51784 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
USP11P51784 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.75■□□□□ 0.27
USP11P51784 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.74■□□□□ 0.27
USP11P51784 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP11P51784 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP11P51784 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
USP11P51784 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP11P51784 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.74■□□□□ 0.27
USP11P51784 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP11P51784 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
USP11P51784 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.74■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms