Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.8■□□□□ 0.12
LIG3P49916 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.8■□□□□ 0.12
LIG3P49916 COPE-202ENST00000349893 948 ntTSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.8■□□□□ 0.12
LIG3P49916 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
LIG3P49916 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.8■□□□□ 0.12
LIG3P49916 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 KRT18P64-201ENST00000434946 1219 ntBASIC15.8■□□□□ 0.12
LIG3P49916 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.8■□□□□ 0.12
LIG3P49916 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.8■□□□□ 0.12
LIG3P49916 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
LIG3P49916 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
LIG3P49916 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
LIG3P49916 DNAJC27-207ENST00000534855 4831 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 ZBED1P1-201ENST00000502364 1930 ntBASIC15.8■□□□□ 0.12
LIG3P49916 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC15.8■□□□□ 0.12
LIG3P49916 DDX17-202ENST00000396821 4791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
LIG3P49916 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
LIG3P49916 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIG3P49916 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
LIG3P49916 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIG3P49916 CLCN7-203ENST00000448525 4151 ntTSL 2 BASIC15.79■□□□□ 0.12
LIG3P49916 AC011474.4-201ENST00000623523 2076 ntBASIC15.79■□□□□ 0.12
LIG3P49916 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC15.79■□□□□ 0.12
LIG3P49916 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIG3P49916 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIG3P49916 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
LIG3P49916 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
LIG3P49916 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC15.79■□□□□ 0.12
LIG3P49916 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.79■□□□□ 0.12
LIG3P49916 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIG3P49916 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
LIG3P49916 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.79■□□□□ 0.12
LIG3P49916 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.79■□□□□ 0.12
LIG3P49916 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.79■□□□□ 0.12
LIG3P49916 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC15.79■□□□□ 0.12
LIG3P49916 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.79■□□□□ 0.12
LIG3P49916 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.79■□□□□ 0.12
LIG3P49916 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
LIG3P49916 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
LIG3P49916 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIG3P49916 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIG3P49916 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIG3P49916 SCARB2-227ENST00000640957 3255 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
LIG3P49916 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC15.79■□□□□ 0.12
LIG3P49916 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.79■□□□□ 0.12
LIG3P49916 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIG3P49916 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
LIG3P49916 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIG3P49916 AC109583.3-201ENST00000641183 3128 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
LIG3P49916 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
LIG3P49916 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
LIG3P49916 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 LINC02346-201ENST00000383019 1967 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
LIG3P49916 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 GNAS-213ENST00000371099 3709 ntTSL 5 BASIC15.78■□□□□ 0.12
LIG3P49916 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
LIG3P49916 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC15.78■□□□□ 0.12
LIG3P49916 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.78■□□□□ 0.12
LIG3P49916 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC15.78■□□□□ 0.12
LIG3P49916 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.78■□□□□ 0.12
LIG3P49916 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC15.78■□□□□ 0.12
LIG3P49916 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC15.78■□□□□ 0.12
LIG3P49916 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.78■□□□□ 0.12
LIG3P49916 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
LIG3P49916 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
LIG3P49916 SLED1-202ENST00000512051 380 ntBASIC15.78■□□□□ 0.12
LIG3P49916 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.78■□□□□ 0.12
LIG3P49916 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC15.78■□□□□ 0.12
LIG3P49916 RARRES2P5-201ENST00000564013 466 ntBASIC15.78■□□□□ 0.12
LIG3P49916 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
LIG3P49916 AC008494.3-201ENST00000606615 944 ntBASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms