Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
CTCFP49711 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC17.14■□□□□ 0.33
CTCFP49711 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.14■□□□□ 0.33
CTCFP49711 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC17.14■□□□□ 0.33
CTCFP49711 HHLA3-202ENST00000361764 692 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
CTCFP49711 DKKL1P1-201ENST00000400550 698 ntBASIC17.14■□□□□ 0.33
CTCFP49711 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
CTCFP49711 OR2T27-202ENST00000460972 1136 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
CTCFP49711 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.14■□□□□ 0.33
CTCFP49711 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC17.14■□□□□ 0.33
CTCFP49711 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC17.14■□□□□ 0.33
CTCFP49711 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 AC138701.2-201ENST00000553634 226 ntBASIC17.14■□□□□ 0.33
CTCFP49711 HERC2P11-201ENST00000562845 725 ntBASIC17.14■□□□□ 0.33
CTCFP49711 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 AL590235.1-201ENST00000564650 861 ntBASIC17.14■□□□□ 0.33
CTCFP49711 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC17.14■□□□□ 0.33
CTCFP49711 AC100756.2-201ENST00000569537 736 ntBASIC17.14■□□□□ 0.33
CTCFP49711 AC008825.2-201ENST00000603374 718 ntBASIC17.14■□□□□ 0.33
CTCFP49711 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
CTCFP49711 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC17.14■□□□□ 0.33
CTCFP49711 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC17.14■□□□□ 0.33
CTCFP49711 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.14■□□□□ 0.33
CTCFP49711 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC17.14■□□□□ 0.33
CTCFP49711 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC17.14■□□□□ 0.33
CTCFP49711 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 C1R-202ENST00000536053 2347 ntTSL 2 BASIC17.14■□□□□ 0.33
CTCFP49711 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
CTCFP49711 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC17.14■□□□□ 0.33
CTCFP49711 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.13■□□□□ 0.33
CTCFP49711 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 AL365203.3-201ENST00000609742 2057 ntBASIC17.13■□□□□ 0.33
CTCFP49711 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 PTGER4P2-201ENST00000328411 252 ntBASIC17.13■□□□□ 0.33
CTCFP49711 MRPS11-202ENST00000353598 766 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CTCFP49711 ZNF286A-201ENST00000395893 654 ntTSL 3 BASIC17.13■□□□□ 0.33
CTCFP49711 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC17.13■□□□□ 0.33
CTCFP49711 GUSBP10-201ENST00000417412 665 ntBASIC17.13■□□□□ 0.33
CTCFP49711 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CTCFP49711 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC17.13■□□□□ 0.33
CTCFP49711 PTGER4P3-201ENST00000458150 252 ntBASIC17.13■□□□□ 0.33
CTCFP49711 GLUD1P3-201ENST00000507952 896 ntTSL 2 BASIC17.13■□□□□ 0.33
CTCFP49711 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC17.13■□□□□ 0.33
CTCFP49711 AC068831.5-201ENST00000557387 328 ntBASIC17.13■□□□□ 0.33
CTCFP49711 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC17.13■□□□□ 0.33
CTCFP49711 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC17.13■□□□□ 0.33
CTCFP49711 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CTCFP49711 PHF23-213ENST00000613632 850 ntTSL 5 BASIC17.13■□□□□ 0.33
CTCFP49711 PAUPAR-201ENST00000630360 2965 ntBASIC17.13■□□□□ 0.33
CTCFP49711 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC17.13■□□□□ 0.33
CTCFP49711 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CTCFP49711 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CTCFP49711 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.13■□□□□ 0.33
CTCFP49711 AL596087.1-201ENST00000400979 1969 ntBASIC17.13■□□□□ 0.33
CTCFP49711 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CTCFP49711 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC17.13■□□□□ 0.33
CTCFP49711 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 ACE-204ENST00000428043 5120 ntTSL 2 BASIC17.13■□□□□ 0.33
CTCFP49711 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
CTCFP49711 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CTCFP49711 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC17.12■□□□□ 0.33
CTCFP49711 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.12■□□□□ 0.33
CTCFP49711 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC17.12■□□□□ 0.33
CTCFP49711 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 SERPINF1-201ENST00000254722 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 HLA-DQB1-202ENST00000399079 1501 ntBASIC17.12■□□□□ 0.33
CTCFP49711 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC17.12■□□□□ 0.33
CTCFP49711 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC17.12■□□□□ 0.33
CTCFP49711 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CTCFP49711 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CTCFP49711 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms